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contig_metadata

33 rows where bioproject = "PRJNA493827" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 33 ✖

tax_clade 1

bioproject 1

  • PRJNA493827 · 33 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3021107 3021107 PRJNA493827_P_NODE_13443_length_1109_cov_5.150579_g11965_i0 PRJNA493827 13443 1109 5.150579 57.11992111 Hartmannella cantabrigiensis 239731 Tubulinea other_Eukaryota 911 0   NTclustered gi|33946358|gb|AY294158.1| 239731 g11965 i0 82.004 93.2723174030658 1078 188 97 6 35 1109 1103 29 Hartmannella cantabrigiensis actin mRNA, complete cds blastn 103439 911 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Hartmannella Hartmannella cantabrigiensis
3023303 3023303 PRJNA493827_P_NODE_238983_length_226_cov_2.078431_g236784_i0 PRJNA493827 238983 226 2.078431 4.69725406 Amoeba proteus 5775 Tubulinea other_Eukaryota 150 3.7e-42   NR AAP88974.1 5775 g236784 i0 92 0.995575221238938 75 6 99.6 0 2 226 5 79 AAP88974.1 S-adenosylmethionine synthetase 2 [Amoeba proteus] diamond 225 150 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
4299902 4299902 PRJNA493827_P_NODE_46724_length_526_cov_1.688742_g44535_i0 PRJNA493827 46724 526 1.688742 8.88278292 Copromyxa protea 931554 Tubulinea other_Eukaryota 331 5.92e-86   NTclustered gi|508737347|dbj|AB766053.1| 931554 g44535 i0 78.788 8.65209125475285 495 103 94 2 9 502 494 1 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 4551 331 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
4300596 4300596 PRJNA493827_P_NODE_73704_length_403_cov_2.312121_g71506_i0 PRJNA493827 73704 403 2.312121 9.31784763 Tubulinea group 04 sp. MSED2 1215997 Tubulinea other_Eukaryota 732 0   NTclustered gi|399764277|gb|JQ271788.1| 1215997 g71506 i0 99.749 71.4416873449131 399 1 99 0 2 400 660 1058 Tubulinea group 04 sp. MSED2 18S ribosomal RNA gene, partial sequence blastn 28791 732 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 04 sp. MSED2
5574655 5574655 PRJNA493827_P_NODE_17465_length_950_cov_2.150513_g15783_i0 PRJNA493827 17465 950 2.150513 20.4298735 Copromyxa protea 931554 Tubulinea other_Eukaryota 528 3.81e-185   NR BAN33737.1 931554 g15783 i0 82.5 0.994736842105263 315 52 98.5 1 14 949 1 315 BAN33737.1 elongation factor-like protein [Copromyxa protea] diamond 945 528 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
8124266 8124266 PRJNA493827_P_NODE_179107_length_255_cov_1.197802_g176909_i0 PRJNA493827 179107 255 1.197802 3.0543951 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 166 3.2799999999999996e-47   NR BAN33737.1 931554 g176909 i0 95.3 7 85 4 100 0 1 255 50 134 BAN33737.1 elongation factor-like protein [Copromyxa protea] diamond 1785 166 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
9400987 9400987 PRJNA493827_P_NODE_42448_length_556_cov_15.958592_g40262_i0 PRJNA493827 42448 556 15.958592 88.72977152 Amoeba proteus 5775 Tubulinea other_Eukaryota 191 1.1099999999999999e-43   NTclustered gi|173717|gb|M19222.1|AMPRRM 5775 g40262 i0 81.78 29.8776978417266 236 36 42 6 202 434 417 186 A.proteus 28S large subunit rRNA, 5' end blastn 16612 191 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
10033281 10033281 PRJNA493827_P_NODE_138128_length_290_cov_2.350230_g135930_i0 PRJNA493827 138128 290 2.35023 6.815667 Vermamoeba 1260114 Tubulinea other_Eukaryota 536 6.079999999999999e-148   NTclustered gi|909719645|gb|KT185625.1| 5778 g135930 i0 100 98.2586206896552 290 0 100 0 1 290 5299 5588 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 28495 536 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
13224231 13224231 PRJNA493827_P_NODE_143511_length_285_cov_2.122642_g141313_i0 PRJNA493827 143511 285 2.122642 6.0495297 Amoeba proteus 5775 Tubulinea other_Eukaryota 350 8.34e-92   NTclustered gi|844573744|gb|KP411223.1| 5775 g141313 i0 90.53 0.926315789473684 264 25 93 0 18 281 879 616 Amoeba proteus Tom40 mRNA, complete cds blastn 264 350 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
13227729 13227729 PRJNA493827_P_NODE_79551_length_386_cov_1.763578_g77353_i0 PRJNA493827 79551 386 1.763578 6.80741108 Amoeba leningradensis 160820 Tubulinea other_Eukaryota 172 2.709999999999999e-38   NTclustered gi|17897590|emb|AJ314605.1| 160820 g77353 i0 87.013 1.64766839378238 154 19 40 1 1 153 965 812 Amoeba leningradensis partial 16S rRNA gene, strain CCAP 1503/6 blastn 636 172 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba leningradensis
13859852 13859852 PRJNA493827_P_NODE_92391_length_357_cov_1.109155_g90193_i0 PRJNA493827 92391 357 1.109155 3.95968335 Saccamoeba 136463 Tubulinea other_Eukaryota 649 0   NTclustered gi|399764206|gb|JQ271717.1| 1215623 g90193 i0 99.44 94.3305322128852 357 2 100 0 1 357 1549 1193 Saccamoeba sp. DP7 18S ribosomal RNA gene, partial sequence blastn 33676 649 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba sp. DP7
15774302 15774302 PRJNA493827_P_NODE_202033_length_247_cov_1.488506_g199835_i0 PRJNA493827 202033 247 1.488506 3.67660982 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 424 4.1099999999999996e-114   NTclustered gi|909719645|gb|KT185625.1| 5778 g199835 i0 97.571 1.78947368421053 247 6 100 0 1 247 7096 6850 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 442 424 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
18321347 18321347 PRJNA493827_P_NODE_112995_length_322_cov_0.827309_g110797_i0 PRJNA493827 112995 322 0.827309 2.66393498 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 154 8.05e-33   NTclustered gi|511487963|gb|JX898537.1| 1260765 g110797 i0 77.778 2.32919254658385 270 46 81 10 62 322 1 265 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 750 154 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
18321523 18321523 PRJNA493827_P_NODE_119595_length_312_cov_2.150628_g117397_i0 PRJNA493827 119595 312 2.150628 6.70995936 Chaos carolinense 160823 Tubulinea other_Eukaryota 169 1.09e-51   NR AFX73058.1 160823 g117397 i0 86.9 0.951923076923077 99 12 94.2 1 295 2 1 99 AFX73058.1 14-3-3 protein, partial [Chaos carolinense] diamond 297 169 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Chaos Chaos carolinense
18323428 18323428 PRJNA493827_P_NODE_207095_length_246_cov_1.184971_g204897_i0 PRJNA493827 207095 246 1.184971 2.91502866 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 411 3.1799999999999995e-110   NTclustered gi|62910949|gb|AY925001.1| 5778 g204897 i0 96.748 2.85365853658537 246 8 100 0 1 246 294 49 Hartmannella vermiformis Rpl7A mRNA, partial cds blastn 702 411 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
20872356 20872356 PRJNA493827_P_NODE_150017_length_279_cov_2.699029_g147819_i0 PRJNA493827 150017 279 2.699029 7.53029091 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 449 7.799999999999999e-122   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g147819 i0 95.699 38.9820788530466 279 12 100 0 1 279 2519 2241 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 10876 449 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
22149305 22149305 PRJNA493827_P_NODE_34918_length_626_cov_3.321881_g32762_i0 PRJNA493827 34918 626 3.321881 20.79497506 Nebela aliciae 1247258 Tubulinea other_Eukaryota 351 5.47e-92   NTclustered gi|356713505|gb|JN849023.1| 1247258 g32762 i0 77.251 75.2188498402556 633 122 99 21 2 625 1 620 Nebela aliciae isolate N_tin_gal20 COXI gene, partial sequence; mitochondrial blastn 47087 351 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Hyalospheniidae Nebela Nebela aliciae
22150928 22150928 PRJNA493827_P_NODE_99398_length_343_cov_5.511111_g97200_i0 PRJNA493827 99398 343 5.511111 18.90311073 Amoeba leningradensis 160820 Tubulinea other_Eukaryota 294 4.88e-75   NTclustered gi|17897590|emb|AJ314605.1| 160820 g97200 i0 90.308 49.5510204081633 227 18 66 4 11 235 1 225 Amoeba leningradensis partial 16S rRNA gene, strain CCAP 1503/6 blastn 16996 294 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba leningradensis
24696101 24696101 PRJNA493827_P_NODE_129700_length_300_cov_1.449339_g127502_i0 PRJNA493827 129700 300 1.449339 4.348017 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 407 5.17e-109   NTclustered gi|88601207|gb|DQ384272.1| 5778 g127502 i0 92.308 0.953333333333333 286 22 95 0 1 286 299 14 Hartmannella vermiformis unknown mRNA blastn 286 407 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
25332057 25332057 PRJNA493827_P_NODE_40460_length_572_cov_3.442886_g38280_i0 PRJNA493827 40460 572 3.442886 19.69330792 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 444 7.97e-120   NTclustered gi|304308754|gb|HM853708.1| 497998 g38280 i0 80.903 98.7727272727273 576 98 99 12 2 571 113 682 Arcella hemisphaerica strain blue&red clone act21 actin gene, partial cds blastn 56498 446 0.995515695067265 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Arcellidae Arcella Arcella hemisphaerica
26855594 26855594 PRJNA493827_P_NODE_80821_length_383_cov_1.487097_g78623_i0 PRJNA493827 80821 383 1.487097 5.69558151 Copromyxa protea 931554 Tubulinea other_Eukaryota 223 2.66e-68   NR BAN33737.1 931554 g78623 i0 84.3 0.994778067885117 127 20 99.5 0 2 382 249 375 BAN33737.1 elongation factor-like protein [Copromyxa protea] diamond 381 223 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
26934264 26934264 PRJNA493827_P_NODE_206162_length_246_cov_2.439306_g203964_i0 PRJNA493827 206162 246 2.439306 6.00069276 root 1 Root_unresolved Root_unresolved 96.7 1.3e-22   NR ABD46563.1 5778 g203964 i0 50 5 82 41 100 0 246 1 103 184 ABD46563.1 succinyl-diaminopimelate desuccinylase-like protein A, partial [Vermamoeba vermiformis] diamond 1230 97.4 0.992813141683778 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
28434962 28434962 PRJNA493827_P_NODE_78846_length_388_cov_1.707937_g76648_i0 PRJNA493827 78846 388 1.707937 6.62679556 Amoeba proteus 5775 Tubulinea other_Eukaryota 224 1.15e-72   NR AAW58116.1 5775 g76648 i0 83.1 0.958762886597938 124 21 95.9 0 387 16 50 173 AAW58116.1 peroxiredoxin, partial [Amoeba proteus] diamond 372 224 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
28576736 28576736 PRJNA493827_P_NODE_180207_length_254_cov_1.276243_g178009_i0 PRJNA493827 180207 254 1.276243 3.24165722 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 58.2 9.89e-8   NR AAY21191.1 5778 g178009 i0 45.5 3.16535433070866 66 36 78 0 1 198 173 238 AAY21191.1 Rpl7A, partial [Vermamoeba vermiformis] diamond 804 58.2 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
29066475 29066475 PRJNA493827_P_NODE_25528_length_753_cov_1.035294_g23591_i0 PRJNA493827 25528 753 1.035294 7.79576382 Amoeba proteus 5775 Tubulinea other_Eukaryota 318 5.329999999999999e-104   NR AAD37351.1 5775 g23591 i0 76.6 0.832669322709163 209 48 83.3 1 61 687 3 210 AAD37351.1 pepstatin-insensitive carboxyl proteinase 1, partial [Amoeba proteus] diamond 627 318 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
29318804 29318804 PRJNA493827_P_NODE_207529_length_246_cov_0.890173_g205331_i0 PRJNA493827 207529 246 0.890173 2.18982558 Amoeba proteus 5775 Tubulinea other_Eukaryota 154 3.099999999999999e-43   NR AAP88974.1 5775 g205331 i0 90.1 0.98780487804878 81 8 98.8 0 3 245 284 364 AAP88974.1 S-adenosylmethionine synthetase 2 [Amoeba proteus] diamond 243 154 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
29823854 29823854 PRJNA493827_P_NODE_175371_length_258_cov_1.248649_g173173_i0 PRJNA493827 175371 258 1.248649 3.22151442 Copromyxa protea 931554 Tubulinea other_Eukaryota 166 4.8e-47   NR BAN33737.1 931554 g173173 i0 89.5 1 86 9 100 0 1 258 315 400 BAN33737.1 elongation factor-like protein [Copromyxa protea] diamond 258 166 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
30361691 30361691 PRJNA493827_P_NODE_76372_length_395_cov_2.447205_g74174_i0 PRJNA493827 76372 395 2.447205 9.66645975 Copromyxa protea 931554 Tubulinea other_Eukaryota 230 3.18e-71   NR BAN33737.1 931554 g74174 i0 90.3 0.941772151898734 124 12 94.2 0 2 373 341 464 BAN33737.1 elongation factor-like protein [Copromyxa protea] diamond 372 230 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
30424792 30424792 PRJNA493827_P_NODE_191413_length_250_cov_0.870056_g189215_i0 PRJNA493827 191413 250 0.870056 2.17514 Amoeba proteus 5775 Tubulinea other_Eukaryota 66.2 2.09e-10   NR ABD16178.1 5775 g189215 i0 60.3 0.816 68 27 81.6 0 245 42 135 202 ABD16178.1 110 kDa actin binding protein interacting with anti-filamin antibody [Amoeba proteus] diamond 204 66.2 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
30835055 30835055 PRJNA493827_P_NODE_181594_length_253_cov_1.155556_g179396_i0 PRJNA493827 181594 253 1.155556 2.92355668 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 63.9 1.46e-9   NR AAZ06403.1 5778 g179396 i0 42.9 0.74703557312253 63 36 74.7 0 190 2 519 581 AAZ06403.1 mitochondrial helicase twinkle [Vermamoeba vermiformis] diamond 189 63.9 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
30850710 30850710 PRJNA493827_P_NODE_11694_length_1209_cov_2.279930_g10325_i0 PRJNA493827 11694 1209 2.27993 27.5643537 root 1 Root_unresolved Root_unresolved 307 1.14e-97   NR AKT93936.1 5778 g10325 i0 54.1 1.3970223325062 281 125 69.7 2 34 876 124 400 AKT93936.1 translation elongation factor Tu [Vermamoeba vermiformis] diamond 1689 310 0.990322580645161 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
32416537 32416537 PRJNA493827_P_NODE_78339_length_389_cov_3.528481_g76141_i0 PRJNA493827 78339 389 3.528481 13.72579109 Copromyxa protea 931554 Tubulinea other_Eukaryota 222 5.7499999999999985e-68   NR BAN33737.1 931554 g76141 i0 89.1 0.917737789203085 119 13 91.8 0 389 33 344 462 BAN33737.1 elongation factor-like protein [Copromyxa protea] diamond 357 222 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
32605987 32605987 PRJNA493827_P_NODE_154920_length_275_cov_1.698020_g152722_i0 PRJNA493827 154920 275 1.69802 4.669555 Chaos carolinense 160823 Tubulinea other_Eukaryota 152 9.13e-44   NR AFX73090.1 160823 g152722 i0 81.3 1.98545454545455 91 17 99.3 0 274 2 99 189 AFX73090.1 elongation factor 2 alpha, partial [Chaos carolinense] diamond 546 152 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Chaos Chaos carolinense

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;