RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA493827", tax_kingdom = "Thermotogati" and tax_phylum = "Synergistota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Synergistota · 3 ✖

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA493827 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4932691 4932691 PRJNA493827_P_NODE_102664_length_338_cov_1.177358_g100466_i0 PRJNA493827 102664 338 1.177358 3.97947004 Synergistaceae bacterium 2053624 Bacteria Bacteria 107 3.17e-24   NR MDR3230624.1 2053624 g100466 i0 47.3 1.97041420118343 112 54 99.4 1 336 1 721 827 MDR3230624.1 ATP-dependent chaperone ClpB [Synergistaceae bacterium] diamond 666 107 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
12584059 12584059 PRJNA493827_P_NODE_185790_length_251_cov_0.865169_g183592_i0 PRJNA493827 185790 251 0.865169 2.17157419 Bacteria 2 Bacteria Bacteria 52.8 0.023   NTclustered gi|559112715|tpe|HG525411.1| 525903 g183592 i0 100 0.334661354581673 28 0 11 0 3 30 342 315 TPA: Thermanaerovibrio acidaminovorans DSM 6589 tmRNA gene Therm_acida_6589 blastn 84 52.8 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae Thermanaerovibrio Thermanaerovibrio acidaminovorans
30250699 30250699 PRJNA493827_P_NODE_60272_length_453_cov_1.500000_g58076_i0 PRJNA493827 60272 453 1.5 6.795 FCB group 1783270 Bacteria Bacteria 63.5 1.15e-9   NR WP_024821140.1 81467 g58076 i0 62.2 0.880794701986755 45 17 29.8 0 62 196 49 93 WP_024821140.1 RidA family protein [Aminobacterium mobile] diamond 399 63.5 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Aminobacterium Aminobacterium mobile

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;