contig_metadata
11 rows where bioproject = "PRJNA493827" and tax_clade = "delta/epsilon subdivisions"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11949483 | 11949483 | PRJNA493827_P_NODE_160630_length_270_cov_1.563452_g158432_i0 | PRJNA493827 | 160630 | 270 | 1.563452 | 4.2213204 | Bacteria | 2 | Bacteria | Bacteria | 78.6 | 1.32e-14 | NR | OGQ53114.1 | 1797882 | g158432 | i0 | 44.9 | 6.76666666666667 | 89 | 47 | 97.8 | 2 | 1 | 264 | 73 | 160 | OGQ53114.1 MAG: ATP-dependent DNA helicase RecQ [Deltaproteobacteria bacterium RIFCSPLOWO2_02_FULL_53_8] | diamond | 1827 | 78.6 | 1 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | Deltaproteobacteria bacterium RIFCSPLOWO2_02_FULL_53_8 | ||||||
| 11951050 | 11951050 | PRJNA493827_P_NODE_233050_length_241_cov_0.916667_g230852_i0 | PRJNA493827 | 233050 | 241 | 0.916667 | 2.20916747 | uncultured delta proteobacterium | 34034 | Bacteria | Bacteria | 209 | 1.22e-49 | NTclustered | gi|2874253659|emb|OY969087.1| | 34034 | g230852 | i0 | 83.784 | 0.921161825726141 | 222 | 34 | 92 | 2 | 1 | 221 | 6129154 | 6129374 | MAG: uncultured delta proteobacterium isolate MFD01721.bin.c.1 genome assembly, chromosome: 1 | blastn | 222 | 209 | 1 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | uncultured delta proteobacterium | ||||||
| 18324029 | 18324029 | PRJNA493827_P_NODE_236255_length_237_cov_2.347561_g234056_i0 | PRJNA493827 | 236255 | 237 | 2.347561 | 5.56371957 | Persicimonas caeni | 2292766 | Bacteria | Bacteria | 87.9 | 5.83e-13 | NTclustered | gi|1695542189|gb|CP041186.1| | 2292766 | g234056 | i0 | 82.857 | 2.62025316455696 | 105 | 11 | 53 | 6 | 75 | 175 | 2181949 | 2181848 | Persicimonas caeni strain YN101 chromosome | blastn | 621 | 87.9 | 1 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | Bradymonadales | Bradymonadaceae | Persicimonas | Persicimonas caeni | |||
| 18325283 | 18325283 | PRJNA493827_P_NODE_68395_length_421_cov_1.241379_g66198_i0 | PRJNA493827 | 68395 | 421 | 1.241379 | 5.22620559 | Microvenator marinus | 2600177 | Bacteria | Bacteria | 302 | 3.6500000000000004e-77 | NTclustered | gi|1722470586|gb|CP042467.1| | 2600177 | g66198 | i0 | 82.899 | 131.622327790974 | 345 | 50 | 81 | 8 | 1 | 340 | 702514 | 702854 | Microvenator marinus strain V1718 chromosome, complete genome | blastn | 55413 | 302 | 1 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | Bradymonadales | Microvenatoraceae | Microvenator | Microvenator marinus | |||
| 27834812 | 27834812 | PRJNA493827_P_NODE_232364_length_241_cov_0.916667_g230166_i0 | PRJNA493827 | 232364 | 241 | 0.916667 | 2.20916747 | Deltaproteobacteria bacterium ADurb.Bin2 | 2026735 | Bacteria | Bacteria | 95.9 | 7.25e-21 | NR | OQB08498.1 | 1852869 | g230166 | i0 | 53.6 | 8.43983402489627 | 84 | 33 | 97.1 | 1 | 238 | 5 | 497 | 580 | OQB08498.1 MAG: Serine/threonine-protein kinase pkn1 [Deltaproteobacteria bacterium ADurb.Bin207] | diamond | 2034 | 95.9 | 1 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | Deltaproteobacteria bacterium ADurb.Bin207 | ||||||
| 30013667 | 30013667 | PRJNA493827_P_NODE_149691_length_280_cov_1.115942_g147493_i0 | PRJNA493827 | 149691 | 280 | 1.115942 | 3.1246376 | Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14 | 2013741 | Bacteria | Bacteria | 68.9 | 3.58e-11 | NR | PKN54244.1 | 2013741 | g147493 | i0 | 52.6 | 0.835714285714286 | 78 | 34 | 83.6 | 2 | 3 | 236 | 1424 | 1498 | PKN54244.1 MAG: hypothetical protein CVU56_27610, partial [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14] | diamond | 234 | 68.9 | 1 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14 | ||||||
| 30819213 | 30819213 | PRJNA493827_P_NODE_236414_length_236_cov_2.834356_g234215_i0 | PRJNA493827 | 236414 | 236 | 2.834356 | 6.68908016 | Bacteria | 2 | Bacteria | Bacteria | 62 | 4.78e-9 | NR | OGP73786.1 | 1797840 | g234215 | i0 | 62.5 | 3.27966101694915 | 40 | 15 | 50.8 | 0 | 1 | 120 | 211 | 250 | OGP73786.1 MAG: hypothetical protein A2V86_01420 [Deltaproteobacteria bacterium RBG_16_49_23] | diamond | 774 | 62 | 1 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | Deltaproteobacteria bacterium RBG_16_49_23 | ||||||
| 31435635 | 31435635 | PRJNA493827_P_NODE_58336_length_461_cov_2.340206_g56140_i0 | PRJNA493827 | 58336 | 461 | 2.340206 | 10.78834966 | Microvenator marinus | 2600177 | Bacteria | Bacteria | 55.5 | 1.26e-5 | NR | WP_146962556.1 | 2600177 | g56140 | i0 | 56.3 | 0.31236442516269 | 48 | 19 | 31.2 | 1 | 244 | 101 | 356 | 401 | WP_146962556.1 hypothetical protein [Microvenator marinus] | diamond | 144 | 55.5 | 1 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | Bradymonadales | Microvenatoraceae | Microvenator | Microvenator marinus | |||
| 32290195 | 32290195 | PRJNA493827_P_NODE_213699_length_245_cov_0.895349_g211501_i0 | PRJNA493827 | 213699 | 245 | 0.895349 | 2.19360505 | SAR324 cluster bacterium | 2024889 | Bacteria | Bacteria | 43.1 | 0.027 | NR | MBF0280102.1 | 2024889 | g211501 | i0 | 37.7 | 0.746938775510204 | 61 | 31 | 66.1 | 2 | 9 | 170 | 100 | 160 | MBF0280102.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II [SAR324 cluster bacterium] | diamond | 183 | 43.1 | 1 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | SAR324 cluster bacterium | ||||||
| 32416452 | 32416452 | PRJNA493827_P_NODE_157639_length_273_cov_1.185000_g155441_i0 | PRJNA493827 | 157639 | 273 | 1.185 | 3.23505 | SAR324 cluster bacterium | 2024889 | Bacteria | Bacteria | 41.2 | 0.0133 | NR | MDP7438704.1 | 2024889 | g155441 | i0 | 57.1 | 0.307692307692308 | 28 | 12 | 30.8 | 0 | 264 | 181 | 2 | 29 | MDP7438704.1 membrane-binding protein [SAR324 cluster bacterium] | diamond | 84 | 41.2 | 1 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | SAR324 cluster bacterium | ||||||
| 32794714 | 32794714 | PRJNA493827_P_NODE_228360_length_242_cov_0.911243_g226162_i0 | PRJNA493827 | 228360 | 242 | 0.911243 | 2.20520806 | Persicimonas caeni | 2292766 | Bacteria | Bacteria | 52 | 2.05e-5 | NR | WP_141199634.1 | 2292766 | g226162 | i0 | 43.6 | 0.681818181818182 | 55 | 16 | 50.8 | 2 | 233 | 111 | 288 | 341 | WP_141199634.1 hypothetical protein [Persicimonas caeni] | diamond | 165 | 52 | 1 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | Bradymonadales | Bradymonadaceae | Persicimonas | Persicimonas caeni |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;