RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA493827", tax_clade = "PVC group" and tax_phylum = "Kiritimatiellota"

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tax_superkingdom 1

tax_phylum 1

  • Kiritimatiellota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA493827 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27076834 27076834 PRJNA493827_P_NODE_214502_length_245_cov_0.895349_g212304_i0 PRJNA493827 214502 245 0.895349 2.19360505 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 73.9 4e-13   NR HQQ04229.1 2212473 g212304 i0 49.4 0.991836734693878 81 39 99.2 1 2 244 173 251 HQQ04229.1 C25 family cysteine peptidase [Kiritimatiellia bacterium] diamond 243 73.9 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium
29098033 29098033 PRJNA493827_P_NODE_6268_length_1710_cov_1.842395_g5379_i0 PRJNA493827 6268 1710 1.842395 31.5049545 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 49.3 0.0139   NR MBR0196784.1 2212473 g5379 i0 27.1 0.233333333333333 133 62 22.3 4 761 381 81 184 MBR0196784.1 leucine-rich repeat domain-containing protein [Kiritimatiellia bacterium] diamond 399 49.3 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium
30187137 30187137 PRJNA493827_P_NODE_162992_length_268_cov_1.579487_g160794_i0 PRJNA493827 162992 268 1.579487 4.23302516 Pseudomonadati 3379134 Bacteria Bacteria 76.3 8.9e-15   NR MFO1490841.1 2212473 g160794 i0 56.3 2.89925373134328 64 28 71.6 0 3 194 133 196 MFO1490841.1 nuclear transport factor 2 family protein [Kiritimatiellia bacterium] diamond 777 77 0.990909090909091 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium
31688551 31688551 PRJNA493827_P_NODE_119297_length_313_cov_1.075000_g117099_i0 PRJNA493827 119297 313 1.075 3.36475 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 103 8.4e-24   NR MDD5482617.1 2212473 g117099 i0 60.3 2.86581469648562 73 29 70 0 3 221 263 335 MDD5482617.1 UDP-glucose 4-epimerase GalE [Kiritimatiellia bacterium] diamond 897 103 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;