RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA493827", tax_clade = "FCB group" and tax_phylum = "Balneolota"

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tax_superkingdom 1

tax_phylum 1

  • Balneolota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA493827 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11950303 11950303 PRJNA493827_P_NODE_198250_length_248_cov_0.880000_g196052_i0 PRJNA493827 198250 248 0.88 2.1824 Fodinibius 1397106 Bacteria Bacteria 149 5.85e-41   NR WP_138430543.1 1920650 g196052 i0 91.5 9.91935483870968 82 7 99.2 0 3 248 132 213 WP_138430543.1 thymidine phosphorylase [Fodinibius saliphilus] diamond 2460 149 1 Bacteria FCB group Pseudomonadati Balneolota Balneolia Balneolales Balneolaceae Fodinibius Fodinibius saliphilus
30408764 30408764 PRJNA493827_P_NODE_201953_length_247_cov_1.580460_g199755_i0 PRJNA493827 201953 247 1.58046 3.9037362 Balneolaceae 1813606 Bacteria Bacteria 62.4 4.41e-9   NR MAO64453.1 2024824 g199755 i0 65.1 3.65587044534413 43 15 52.2 0 221 93 415 457 MAO64453.1 carboxypeptidase [Balneola sp.] diamond 903 62.4 1 Bacteria FCB group Pseudomonadati Balneolota Balneolia Balneolales Balneolaceae Balneola Balneola sp.
32226604 32226604 PRJNA493827_P_NODE_115018_length_319_cov_0.845528_g112820_i0 PRJNA493827 115018 319 0.845528 2.69723432 Gracilimonas sp. 1974203 Bacteria Bacteria 45.8 0.00737   NR MEX2604219.1 1974203 g112820 i0 36.5 1.3730407523511 74 41 69.6 2 3 224 349 416 MEX2604219.1 TonB-dependent receptor [Gracilimonas sp.] diamond 438 45.8 1 Bacteria FCB group Pseudomonadati Balneolota Balneolia Balneolales Balneolaceae Gracilimonas Gracilimonas sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;