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contig_metadata

26 rows where bioproject = "PRJNA493632" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 26 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA493632 · 26 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
463106 463106 PRJNA493632_P_NODE_392561_length_273_cov_68.235000_g389122_i0 PRJNA493632 392561 273 68.235 186.28155 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 394 3.61e-105   NTclustered gi|2874253811|emb|OY969795.1| 464461 g389122 i0 93.015 119.380952380952 272 15 99 3 5 273 2059960 2059690 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 32591 394 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
1102448 1102448 PRJNA493632_P_NODE_407841_length_270_cov_2.989848_g404402_i0 PRJNA493632 407841 270 2.989848 8.0725896 Bacteria 2 Bacteria Bacteria 394 3.57e-105   NTclustered gi|2874253811|emb|OY969795.1| 464461 g404402 i0 93.609 160.440740740741 266 14 98 3 1 264 652924 653188 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 43319 394 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
4292187 4292187 PRJNA493632_P_NODE_511904_length_251_cov_0.865169_g508465_i0 PRJNA493632 511904 251 0.865169 2.17157419 uncultured Chlamydiae bacterium 305355 Bacteria Bacteria 311 3.4e-80   NTclustered gi|206572563|gb|FJ160741.1| 305355 g508465 i0 89.837 98.4262948207171 246 19 97 6 9 251 2 244 Uncultured Chlamydiae bacterium clone USC9 16S ribosomal RNA gene, partial sequence blastn 24705 311 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       uncultured Chlamydiae bacterium
9394054 9394054 PRJNA493632_P_NODE_560728_length_247_cov_2.655172_g557289_i0 PRJNA493632 560728 247 2.655172 6.55827484 Candidatus Rubidus massiliensis 1444712 Bacteria Bacteria 440 4.079999999999999e-119   NTclustered gi|565666443|emb|HG726047.1| 1444712 g557289 i0 98.785 106.275303643725 247 3 100 0 1 247 21 267 Candidatus Rubidus massiliensis partial 16S rRNA gene, strain Rubis blastn 26250 440 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Candidatus Rubidus Candidatus Rubidus massiliensis
11946684 11946684 PRJNA493632_P_NODE_677250_length_235_cov_5.067901_g673809_i0 PRJNA493632 677250 235 5.067901 11.90956735 Candidatus Rubidus massiliensis 1444712 Bacteria Bacteria 435 1.79e-117   NTclustered gi|565666443|emb|HG726047.1| 1444712 g673809 i0 100 101.442553191489 235 0 100 0 1 235 1054 1288 Candidatus Rubidus massiliensis partial 16S rRNA gene, strain Rubis blastn 23839 435 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Candidatus Rubidus Candidatus Rubidus massiliensis
14493533 14493533 PRJNA493632_P_NODE_492232_length_253_cov_3.077778_g488793_i0 PRJNA493632 492232 253 3.077778 7.78677834 uncultured Chlamydiae bacterium 305355 Bacteria Bacteria 235 2.12e-57   NTclustered gi|2874254045|emb|OY970369.1| 305355 g488793 i0 83.399 36.9644268774704 253 42 100 0 1 253 790391 790643 MAG: uncultured Chlamydiae bacterium isolate MFD06092.bin.1.176 genome assembly, chromosome: 1 blastn 9352 235 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       uncultured Chlamydiae bacterium
17037070 17037070 PRJNA493632_P_NODE_215394_length_335_cov_1.125954_g211959_i0 PRJNA493632 215394 335 1.125954 3.7719459 Neochlamydia hartmannellae 112235 Bacteria Bacteria 383 9.86e-102   NTclustered gi|194594624|gb|EU662269.1| 112235 g211959 i0 87.537 359.041791044776 337 35 99 7 1 333 904 571 Neochlamydia hartmannellae strain ATCC 50802 23S ribosomal RNA gene, partial sequence blastn 120279 383 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Neochlamydia Neochlamydia hartmannellae
20864848 20864848 PRJNA493632_P_NODE_398297_length_272_cov_2.819095_g394858_i0 PRJNA493632 398297 272 2.819095 7.6679384 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 398 2.7799999999999997e-106   NTclustered gi|2874253811|emb|OY969795.1| 464461 g394858 i0 93.015 121.183823529412 272 19 100 0 1 272 654248 654519 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 32962 398 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
26601566 26601566 PRJNA493632_P_NODE_595201_length_245_cov_0.895349_g591760_i0 PRJNA493632 595201 245 0.895349 2.19360505 Chlamydiota bacterium 2081524 Bacteria Bacteria 148 4.26e-44   NR NGX42125.1 2081524 g591760 i0 79 0.991836734693878 81 17 99.2 0 243 1 22 102 NGX42125.1 hypothetical protein [Chlamydiota bacterium] diamond 243 148 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
27202920 27202920 PRJNA493632_P_NODE_715262_length_215_cov_4.901408_g711820_i0 PRJNA493632 715262 215 4.901408 10.5380272 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 109 1.22e-28   NR MFN4174301.1 2052176 g711820 i0 66.2 0.990697674418605 71 24 99.1 0 214 2 83 153 MFN4174301.1 UDP-N-acetylglucosamine 2-epimerase [Parachlamydiaceae bacterium] diamond 213 109 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
28592647 28592647 PRJNA493632_P_NODE_639607_length_242_cov_0.911243_g636166_i0 PRJNA493632 639607 242 0.911243 2.20520806 Rhabdochlamydiaceae bacterium 2047756 Bacteria Bacteria 128 1.5399999999999999e-34   NR MBY0529708.1 2047756 g636166 i0 77.5 5.9504132231405 80 18 99.2 0 3 242 65 144 MBY0529708.1 LPS export ABC transporter ATP-binding protein [Rhabdochlamydiaceae bacterium] diamond 1440 128 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium
28624378 28624378 PRJNA493632_P_NODE_673367_length_237_cov_2.426829_g669926_i0 PRJNA493632 673367 237 2.426829 5.75158473 Chlamydia psittaci 83554 Bacteria Bacteria 53.5 1.33e-7   NR EPJ19115.1 1112257 g669926 i0 95.7 0.291139240506329 23 1 29.1 0 2 70 12 34 EPJ19115.1 hypothetical protein CP02DC21_1289, partial [Chlamydia psittaci 02DC21] diamond 69 53.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
28687596 28687596 PRJNA493632_P_NODE_701947_length_226_cov_17.339869_g698506_i0 PRJNA493632 701947 226 17.339869 39.18810394 Simkania negevensis 83561 Bacteria Bacteria 86.7 9.63e-18   NR MBN4066495.1 83561 g698506 i0 67.2 1.7787610619469 67 22 88.9 0 25 225 1 67 MBN4066495.1 ABC transporter permease [Simkania negevensis] diamond 402 86.7 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Simkania Simkania negevensis
28844810 28844810 PRJNA493632_P_NODE_129168_length_410_cov_0.913947_g125754_i0 PRJNA493632 129168 410 0.913947 3.7471827 Chlamydiales bacterium 2047757 Bacteria Bacteria 44.7 0.0473   NR HEV7738464.1 2047757 g125754 i0 52.6 0.278048780487805 38 18 27.8 0 115 2 223 260 HEV7738464.1 helitron helicase-like domain-containing protein [Chlamydiales bacterium] diamond 114 44.7 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
28876678 28876678 PRJNA493632_P_NODE_619048_length_243_cov_3.311765_g615607_i0 PRJNA493632 619048 243 3.311765 8.04758895 Chlamydia psittaci 83554 Bacteria Bacteria 40.8 0.0116   NR EPL01720.1 1112253 g615607 i0 94.1 0.432098765432099 17 1 21 0 47 97 1 17 EPL01720.1 hypothetical protein CP02DC14_2224A, partial [Chlamydia psittaci 02DC14] diamond 105 40.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
29413369 29413369 PRJNA493632_P_NODE_583749_length_246_cov_0.890173_g580308_i0 PRJNA493632 583749 246 0.890173 2.18982558 Chlamydia psittaci C6/98 1112249 Bacteria Bacteria 95.5 6.52e-24   NR EPP32773.1 1112249 g580308 i0 75.8 0.75609756097561 62 15 75.6 0 61 246 1 62 EPP32773.1 putative lipoprotein, partial [Chlamydia psittaci C6/98] diamond 186 95.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
29981888 29981888 PRJNA493632_P_NODE_592831_length_245_cov_1.523256_g589390_i0 PRJNA493632 592831 245 1.523256 3.7319772 Parachlamydia sp. 2052048 Bacteria Bacteria 58.5 2.06e-8   NR MCE5318403.1 2052048 g589390 i0 37 0.893877551020408 73 46 89.4 0 244 26 14 86 MCE5318403.1 hypothetical protein [Parachlamydia sp.] diamond 219 58.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia sp.
30393015 30393015 PRJNA493632_P_NODE_422373_length_267_cov_2.927835_g418934_i0 PRJNA493632 422373 267 2.927835 7.81731945 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 114 1.2900000000000002e-27   NR MFI0434844.1 2052176 g418934 i0 69.7 1 89 27 100 0 267 1 173 261 MFI0434844.1 alanine/glycine:cation symporter family protein [Parachlamydiaceae bacterium] diamond 267 114 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
30708497 30708497 PRJNA493632_P_NODE_588414_length_245_cov_56.947674_g584973_i0 PRJNA493632 588414 245 56.947674 139.5218013 Chlamydiota bacterium 2081524 Bacteria Bacteria 119 1.0699999999999999e-32   NR NNM43268.1 2081524 g584973 i0 70.4 0.869387755102041 71 21 86.9 0 213 1 4 74 NNM43268.1 hypothetical protein [Chlamydiota bacterium] diamond 213 119 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
30898268 30898268 PRJNA493632_P_NODE_612774_length_244_cov_0.900585_g609333_i0 PRJNA493632 612774 244 0.900585 2.1974274 Chlamydia psittaci 83554 Bacteria Bacteria 64.3 7.14e-12   NR EPJ33691.1 1112244 g609333 i0 93.3 0.368852459016393 30 2 36.9 0 232 143 2 31 EPJ33691.1 hypothetical protein CP061683_2398, partial [Chlamydia psittaci 06-1683] diamond 90 64.3 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
30961450 30961450 PRJNA493632_P_NODE_645934_length_242_cov_0.911243_g642493_i0 PRJNA493632 645934 242 0.911243 2.20520806 Chlamydia psittaci 83554 Bacteria Bacteria 78.6 4.41e-17   NR EPJ15750.1 1112252 g642493 i0 81.3 0.59504132231405 48 9 59.5 0 163 20 30 77 EPJ15750.1 hypothetical protein CP01DC11_1288, partial [Chlamydia psittaci 01DC11] diamond 144 78.6 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
30992922 30992922 PRJNA493632_P_NODE_422074_length_267_cov_3.432990_g418635_i0 PRJNA493632 422074 267 3.43299 9.1660833 Chlamydia psittaci 83554 Bacteria Bacteria 70.5 4.12e-14   NR EPJ16938.1 1112257 g418635 i0 81.8 0.49438202247191 44 6 48.3 2 149 21 1 43 EPJ16938.1 hypothetical protein CP02DC21_1876 [Chlamydia psittaci 02DC21] diamond 132 70.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
31087579 31087579 PRJNA493632_P_NODE_234495_length_323_cov_1.564000_g231059_i0 PRJNA493632 234495 323 1.564 5.05172 Chlamydia trachomatis 813 Bacteria Bacteria 79 9.2e-17   NR WP_216594844.1 813 g231059 i0 46.3 0.743034055727554 80 43 74.3 0 262 23 1 80 WP_216594844.1 hypothetical protein, partial [Chlamydia trachomatis] diamond 240 79 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis
32289999 32289999 PRJNA493632_P_NODE_466779_length_258_cov_3.200000_g463340_i0 PRJNA493632 466779 258 3.2 8.256 Chlamydia psittaci 83554 Bacteria Bacteria 82.4 8.13e-19   NR EPJ24094.1 1112268 g463340 i0 84.1 1.02325581395349 44 7 51.2 0 185 54 3 46 EPJ24094.1 nef attachable domain protein, partial [Chlamydia psittaci 09DC77] diamond 264 82.4 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
32479729 32479729 PRJNA493632_P_NODE_607259_length_244_cov_1.637427_g603818_i0 PRJNA493632 607259 244 1.637427 3.99532188 Chlamydia psittaci 83554 Bacteria Bacteria 158 2.9099999999999996e-48   NR EPJ17555.1 1112252 g603818 i0 94.7 0.934426229508197 76 4 93.4 0 17 244 4 79 EPJ17555.1 hypothetical protein CP01DC11_1209 [Chlamydia psittaci 01DC11] diamond 228 158 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
32542888 32542888 PRJNA493632_P_NODE_295579_length_297_cov_1.910714_g292141_i0 PRJNA493632 295579 297 1.910714 5.67482058 Chlamydia psittaci 83554 Bacteria Bacteria 52.8 5.32e-7   NR EPJ19115.1 1112257 g292141 i0 74.2 0.313131313131313 31 8 31.3 0 218 126 4 34 EPJ19115.1 hypothetical protein CP02DC21_1289, partial [Chlamydia psittaci 02DC21] diamond 93 52.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;