RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA493632" and tax_phylum = "Candidatus Staskawicziibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Staskawicziibacteriota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA493632 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27297833 27297833 PRJNA493632_P_NODE_385823_length_275_cov_1.673267_g382384_i0 PRJNA493632 385823 275 1.673267 4.60148425 Candidatus Staskawiczbacteria bacterium 2053617 Bacteria Bacteria 137 3.59e-39   NR MCX6721742.1 2053617 g382384 i0 85.3 2.43272727272727 75 11 81.8 0 225 1 1 75 MCX6721742.1 TrmH family RNA methyltransferase [Candidatus Staskawiczbacteria bacterium] diamond 669 137 1 Bacteria Bacteria candidate phyla   Candidatus Staskawicziibacteriota         Candidatus Staskawiczbacteria bacterium
30487500 30487500 PRJNA493632_P_NODE_709273_length_221_cov_4.574324_g705831_i0 PRJNA493632 709273 221 4.574324 10.10925604 Candidatus Staskawiczbacteria bacterium 2053617 Bacteria Bacteria 66.2 6.76e-11   NR MCX6718442.1 2053617 g705831 i0 67.4 1.83257918552036 46 15 62.4 0 3 140 206 251 MCX6718442.1 orotidine-5'-phosphate decarboxylase [Candidatus Staskawiczbacteria bacterium] diamond 405 66.2 1 Bacteria Bacteria candidate phyla   Candidatus Staskawicziibacteriota         Candidatus Staskawiczbacteria bacterium
31672621 31672621 PRJNA493632_P_NODE_421757_length_267_cov_4.695876_g418318_i0 PRJNA493632 421757 267 4.695876 12.53798892 Bacteria 2 Bacteria Bacteria 101 1.34e-22   NR OGZ68747.1 1802207 g418318 i0 73.3 1.7752808988764 86 20 93.3 2 6 254 1887 1972 OGZ68747.1 MAG: hypothetical protein A3D44_02000 [Candidatus Staskawiczbacteria bacterium RIFCSPHIGHO2_02_FULL_42_22] diamond 474 101 1 Bacteria Bacteria candidate phyla   Candidatus Staskawicziibacteriota         Candidatus Staskawiczbacteria bacterium RIFCSPHIGHO2_02_FULL_42_22

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;