RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA493632" and tax_phylum = "Candidatus Parcubacteria"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Parcubacteria · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA493632 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3009529 3009529 PRJNA493632_P_NODE_145943_length_390_cov_3.842271_g142521_i0 PRJNA493632 145943 390 3.842271 14.9848569 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 52.8 0.037   NTclustered gi|2314735967|dbj|AP024681.1| 2762014 g142521 i0 96.875 0.0820512820512821 32 0 8 1 99 129 250604 250573 MAG: Candidatus Parcubacteria bacterium KatS3mg097 DNA, complete genome blastn 32 52.8 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
30582032 30582032 PRJNA493632_P_NODE_729613_length_201_cov_5.578125_g726170_i0 PRJNA493632 729613 201 5.578125 11.21203125 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 100 9.24e-25   NR MBC7766520.1 2762014 g726170 i0 81.5 0.805970149253731 54 10 80.6 0 4 165 142 195 MBC7766520.1 signal peptidase I [Candidatus Parcubacteria bacterium] diamond 162 100 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
32036506 32036506 PRJNA493632_P_NODE_560298_length_247_cov_3.160920_g556859_i0 PRJNA493632 560298 247 3.16092 7.8074724 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 45.8 0.00326   NR MEY2986420.1 2762014 g556859 i0 37.5 0.680161943319838 56 35 68 0 1 168 598 653 MEY2986420.1 hypothetical protein [Candidatus Parcubacteria bacterium] diamond 168 45.8 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;