RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA493632", tax_kingdom = "Orthornavirae" and tax_phylum = "Kitrinoviricota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Kitrinoviricota · 10 ✖

tax_kingdom 1

  • Orthornavirae · 10 ✖

bioproject 1

  • PRJNA493632 · 10 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6845042 6845042 PRJNA493632_P_NODE_641866_length_242_cov_0.911243_g638425_i0 PRJNA493632 641866 242 0.911243 2.20520806 Tobamovirus tomatotessellati 3432892 Viruses Viruses 448 2.3799999999999995e-121   NTclustered gi|13357204|ref|NC_002692.1| 12253 g638425 i0 100 95.7768595041322 242 0 100 0 1 242 4670 4429 Tomato mosaic virus, complete genome blastn 23178 448 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tomatotessellati
6845595 6845595 PRJNA493632_P_NODE_675226_length_236_cov_3.276074_g671785_i0 PRJNA493632 675226 236 3.276074 7.73153464 Cucumovirus CMV 3428131 Viruses Viruses 420 5.04e-113   NTclustered gi|1600618250|gb|MG021462.2| 12305 g671785 i0 98.729 100.275423728814 236 3 100 0 1 236 984 1219 Cucumber mosaic virus isolate Ug92-RNA3 movement protein and coat protein genes, complete cds blastn 23665 420 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Bromoviridae Cucumovirus Cucumovirus CMV
11939066 11939066 PRJNA493632_P_NODE_249770_length_314_cov_4.174274_g246334_i0 PRJNA493632 249770 314 4.174274 13.10722036 Tobamovirus tomatotessellati 3432892 Viruses Viruses 579 1.0899999999999999e-160   NTclustered gi|612340474|gb|KJ207374.1| 12253 g246334 i0 100 99.6114649681529 313 0 99 0 1 313 3636 3948 Tomato mosaic virus isolate Penghu, complete genome blastn 31278 579 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tomatotessellati
13857810 13857810 PRJNA493632_P_NODE_715031_length_215_cov_6.098592_g711589_i0 PRJNA493632 715031 215 6.098592 13.1119728 Tobamovirus 12234 Viruses Viruses 398 2.1099999999999997e-106   NTclustered gi|4416268|gb|AF103779.1|AF103779 12242 g711589 i0 100 99.9953488372093 215 0 100 0 1 215 149 363 Tobacco mosaic virus strain TOM coat protein mRNA, complete cds blastn 21499 398 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tabaci
14496780 14496780 PRJNA493632_P_NODE_684132_length_233_cov_2.725000_g680691_i0 PRJNA493632 684132 233 2.725 6.34925 Pestivirus ovis 3052622 Viruses Viruses 52.8 0.021   NTclustered gi|1885246022|emb|LR824489.1| 358764 g680691 i0 96.774 0.133047210300429 31 1 13 0 171 201 12149 12119 Border disease virus isolate TO_121_04 genome assembly, complete genome: monopartite blastn 31 52.8 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus ovis
15771538 15771538 PRJNA493632_P_NODE_727433_length_203_cov_5.992308_g723990_i0 PRJNA493632 727433 203 5.992308 12.16438524 dengue virus type 4 11070 Viruses Viruses 60.8 9.16e-9   NR WGD01105.1 11070 g723990 i0 60.8 0.753694581280788 51 17 75.4 1 32 184 2417 2464 WGD01105.1 polyprotein [dengue virus type 4] diamond 153 60.8 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Orthoflavivirus Orthoflavivirus denguei
18318195 18318195 PRJNA493632_P_NODE_590875_length_245_cov_2.220930_g587434_i0 PRJNA493632 590875 245 2.22093 5.4412785 Foveavirus mali 35350 Viruses Viruses 392 1.15e-104   NTclustered gi|1129866340|gb|KU324505.1| 35350 g587434 i0 95.51 12.9061224489796 245 11 100 0 1 245 357 601 Foveavirus mali isolate HB-YH2 clone 5 replicase polyprotein gene, partial cds blastn 3162 392 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Foveavirus Foveavirus mali
19588595 19588595 PRJNA493632_P_NODE_370376_length_278_cov_2.702439_g366937_i0 PRJNA493632 370376 278 2.702439 7.51278042 Tobamovirus tomatotessellati 3432892 Viruses Viruses 503 5.88e-138   NTclustered gi|2329449865|gb|OP357949.1| 12253 g366937 i0 99.281 98.6402877697842 278 2 100 0 1 278 1278 1555 Tomato mosaic virus isolate DSMZ PV-1269 RNA-dependent RNA polymerase (ORF2), replication-associated protein (ORF1), movement protein (ORF3), and coat protein (ORF4) genes, complete cds blastn 27422 503 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tomatotessellati
19588726 19588726 PRJNA493632_P_NODE_377136_length_277_cov_1.470588_g373697_i0 PRJNA493632 377136 277 1.470588 4.07352876 Potexvirus ecscacti 3433821 Viruses Viruses 479 9.86e-131   NTclustered gi|1110865423|gb|KX883791.1| 112227 g373697 i0 97.834 15.870036101083 277 6 100 0 1 277 5888 6164 Cactus virus X strain SCM51431 ORF1, ORF2, ORF3, and ORF4 genes, complete cds blastn 4396 479 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus ecscacti
27850399 27850399 PRJNA493632_P_NODE_733804_length_197_cov_6.443548_g730361_i0 PRJNA493632 733804 197 6.443548 12.69378956 Carlavirus 12163 Viruses Viruses 81.3 1.68e-17   NR QED43574.1 12458 g730361 i0 64.6 6.92893401015228 65 22 99 1 197 3 56 119 QED43574.1 NBP [Garlic latent virus] diamond 1365 82 0.991463414634146 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus latensascalonici

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;