RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA493632", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA493632 · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3014857 3014857 PRJNA493632_P_NODE_446023_length_262_cov_5.365079_g442584_i0 PRJNA493632 446023 262 5.365079 14.05650698 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 159 1.37e-34   NTclustered gi|1031965310|gb|KX011115.1| 37360 g442584 i0 100 2.66793893129771 86 0 33 0 177 262 7899 7814 Plasmodiophora brassicae isolate AT 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 699 159 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
4932650 4932650 PRJNA493632_P_NODE_98124_length_458_cov_1.794805_g94731_i0 PRJNA493632 98124 458 1.794805 8.2202069 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 150 1.62e-43   NR SPQ93437.1 37360 g94731 i0 65.7 2.09606986899563 108 37 70.7 0 458 135 37 144 SPQ93437.1 unnamed protein product [Plasmodiophora brassicae] diamond 960 150 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
6845235 6845235 PRJNA493632_P_NODE_654486_length_241_cov_0.916667_g651045_i0 PRJNA493632 654486 241 0.916667 2.20916747 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 123 1.26e-32   NR CEO96711.1 37360 g651045 i0 81.7 0.883817427385892 71 13 88.4 0 217 5 1 71 CEO96711.1 hypothetical protein PBRA_005315 [Plasmodiophora brassicae] diamond 213 123 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
7480476 7480476 PRJNA493632_P_NODE_398866_length_272_cov_2.281407_g395427_i0 PRJNA493632 398866 272 2.281407 6.20542704 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 122 3.73e-30   NR CEP02288.1 37360 g395427 i0 60 0.992647058823529 90 35 99.3 1 2 271 648 736 CEP02288.1 hypothetical protein PBRA_008872 [Plasmodiophora brassicae] diamond 270 122 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
15130403 15130403 PRJNA493632_P_NODE_395872_length_273_cov_1.485000_g392433_i0 PRJNA493632 395872 273 1.485 4.05405 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 89 3.08e-18   NR SPQ94571.1 37360 g392433 i0 51.1 0.989010989010989 90 38 98.9 1 4 273 347 430 SPQ94571.1 unnamed protein product [Plasmodiophora brassicae] diamond 270 89 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
28197712 28197712 PRJNA493632_P_NODE_634346_length_242_cov_2.710059_g630905_i0 PRJNA493632 634346 242 2.710059 6.55834278 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 42.4 0.0462   NR CAL69925.1 37360 g630905 i0 45.1 1.28925619834711 51 20 63.2 1 89 241 13 55 CAL69925.1 hypothetical protein [Plasmodiophora brassicae] diamond 312 42.7 0.992974238875878 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
31467331 31467331 PRJNA493632_P_NODE_648076_length_241_cov_4.875000_g644635_i0 PRJNA493632 648076 241 4.875 11.74875 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 134 6.9599999999999994e-37   NR CEP01968.1 37360 g644635 i0 79.7 0.983402489626556 79 16 98.3 0 239 3 44 122 CEP01968.1 hypothetical protein PBRA_002233 [Plasmodiophora brassicae] diamond 237 134 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;