RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA493632", tax_clade = "Metamonada" and tax_phylum = "Fornicata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Fornicata · 3 ✖

tax_clade 1

  • Metamonada · 3 ✖

bioproject 1

  • PRJNA493632 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1742464 1742464 PRJNA493632_P_NODE_650462_length_241_cov_1.880952_g647021_i0 PRJNA493632 650462 241 1.880952 4.53309432 Giardia duodenalis 5741 Fornicata other_Eukaryota 54.7 0.006   NTclustered gi|159115417|ref|XM_001707880.1| 5741 g647021 i0 100 0.120331950207469 29 0 12 0 210 238 5410 5382 Giardia intestinalis Chorein (GL50803_0087358), partial mRNA blastn 29 54.7 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis
27155245 27155245 PRJNA493632_P_NODE_433802_length_265_cov_1.604167_g430363_i0 PRJNA493632 433802 265 1.604167 4.25104255 root 1 Root_unresolved Root_unresolved 44.7 0.0104   NR TNJ28315.1 5742 g430363 i0 43.5 2.08301886792453 46 25 52.1 1 2 139 704 748 TNJ28315.1 ABC transporter, ATP-binding protein [Giardia muris] diamond 552 45.1 0.991130820399113 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia muris
30992897 30992897 PRJNA493632_P_NODE_354614_length_282_cov_1.306220_g351175_i0 PRJNA493632 354614 282 1.30622 3.6835404 Giardia intestinalis 5741 Fornicata other_Eukaryota 43.1 0.043   NR ESU43065.1 5741 g351175 i0 42.1 0.606382978723404 57 30 58.5 2 20 184 267 322 ESU43065.1 Variant-specific surface protein [Giardia intestinalis] diamond 171 43.1 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;