RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA493632", tax_clade = "Haptista" and tax_superkingdom = "Eukaryota"

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analysis 2

tax_superkingdom 1

  • Eukaryota · 8 ✖

tax_phylum 1

tax_clade 1

  • Haptista · 8 ✖

bioproject 1

  • PRJNA493632 · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4294823 4294823 PRJNA493632_P_NODE_671904_length_237_cov_4.085366_g668463_i0 PRJNA493632 671904 237 4.085366 9.68231742 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 52.8 0.021   NTclustered gi|551559913|ref|XM_005766799.1| 280463 g668463 i0 100 0.118143459915612 28 0 12 0 147 174 708 681 Emiliania huxleyi CCMP1516 type II DNA topoisomerase VI subunit A 2 (Top6A), partial mRNA blastn 28 52.8 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
10670785 10670785 PRJNA493632_P_NODE_620109_length_243_cov_2.376471_g616668_i0 PRJNA493632 620109 243 2.376471 5.77482453 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 73.1 1.68e-8   NTclustered gi|551542608|ref|XM_005759434.1| 280463 g616668 i0 93.878 1.08641975308642 49 1 21 2 3 51 1277 1231 Emiliania huxleyi CCMP1516 hypothetical protein mRNA blastn 264 73.1 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
22141010 22141010 PRJNA493632_P_NODE_472578_length_257_cov_2.429348_g469139_i0 PRJNA493632 472578 257 2.429348 6.24342436 Dicrateria rotunda 2703868 Haptophyta other_Eukaryota 183 7.949999999999997e-42   NTclustered gi|259419544|emb|FN392559.1| 2703868 g469139 i0 82.407 7.93774319066148 216 32 83 5 8 220 258 46 Imantonia rotunda partial mRNA for ADP-ribosylation factor 3, contig 10068 blastn 2040 183 1 Eukaryota Haptista   Haptophyta   Isochrysidales Isochrysidaceae Dicrateria Dicrateria rotunda
23411344 23411344 PRJNA493632_P_NODE_168319_length_369_cov_2.368243_g164892_i0 PRJNA493632 168319 369 2.368243 8.73881667 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 54.7 0.01   NTclustered gi|551609071|ref|XM_005785712.1| 280463 g164892 i0 94.444 0.173441734417344 36 1 9 1 27 61 1699 1734 Emiliania huxleyi CCMP1516 hypothetical protein mRNA blastn 64 54.7 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
26918508 26918508 PRJNA493632_P_NODE_643182_length_242_cov_0.911243_g639741_i0 PRJNA493632 643182 242 0.911243 2.20520806 Chrysochromulina tobinii 1460289 Haptophyta other_Eukaryota 116 3.36e-28   NR KOO24932.1 1460289 g639741 i0 65 0.991735537190083 80 28 99.2 0 240 1 409 488 KOO24932.1 beta-hexosaminidase subunit beta-like protein [Chrysochromulina tobinii] diamond 240 116 1 Eukaryota Haptista   Haptophyta   Prymnesiales Chrysochromulinaceae Chrysochromulina Chrysochromulina tobinii
29887235 29887235 PRJNA493632_P_NODE_612831_length_244_cov_0.900585_g609390_i0 PRJNA493632 612831 244 0.900585 2.1974274 Prymnesium parvum 97485 Haptophyta other_Eukaryota 79.3 1.75e-15   NR KAL1526508.1 97485 g609390 i0 54.8 3.40573770491803 62 28 76.2 0 192 7 205 266 KAL1526508.1 hypothetical protein AB1Y20_015218 [Prymnesium parvum] diamond 831 79.3 1 Eukaryota Haptista   Haptophyta   Prymnesiales Prymnesiaceae Prymnesium Prymnesium parvum
31040596 31040596 PRJNA493632_P_NODE_402235_length_271_cov_7.469697_g398796_i0 PRJNA493632 402235 271 7.469697 20.24287887 root 1 Root_unresolved Root_unresolved 66.6 2.09e-10   NR KAJ1641544.1 483367 g398796 i0 46.2 10.5830258302583 78 39 86.3 2 241 8 323 397 KAJ1641544.1 hypothetical protein T492DRAFT_920404 [Pavlovales sp. CCMP2436] diamond 2868 66.6 1 Eukaryota Haptista   Haptophyta Pavlovophyceae Pavlovales     Pavlovales sp. CCMP2436
32479757 32479757 PRJNA493632_P_NODE_698939_length_228_cov_2.167742_g695498_i0 PRJNA493632 698939 228 2.167742 4.94245176 Emiliania huxleyi CCMP1516 280463 Haptophyta other_Eukaryota 72 1.45e-12   NR XP_005783348.1 280463 g695498 i0 40 1.97368421052632 75 45 98.7 0 226 2 37 111 XP_005783348.1 hypothetical protein EMIHUDRAFT_462781 [Emiliania huxleyi CCMP1516] diamond 450 72 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;