RNAquarium Metadata Server
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contig_metadata

12 rows where bioproject = "PRJNA493632", tax_clade = "FCB group" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 12 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 12 ✖

bioproject 1

  • PRJNA493632 · 12 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26633454 26633454 PRJNA493632_P_NODE_556641_length_248_cov_0.880000_g553202_i0 PRJNA493632 556641 248 0.88 2.1824 Fibrobacter sp. 35828 Bacteria Bacteria 120 4.05e-30   NR NLL13246.1 35828 g553202 i0 72.2 0.955645161290323 79 22 95.6 0 1 237 165 243 NLL13246.1 carboxypeptidase regulatory-like domain-containing protein [Fibrobacter sp.] diamond 237 120 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.
26791944 26791944 PRJNA493632_P_NODE_653981_length_241_cov_0.916667_g650540_i0 PRJNA493632 653981 241 0.916667 2.20916747 Fibrobacter sp. 35828 Bacteria Bacteria 152 1.43e-40   NR NLL12832.1 35828 g650540 i0 91.3 0.995850622406639 80 7 99.6 0 241 2 369 448 NLL12832.1 PAS domain S-box protein [Fibrobacter sp.] diamond 240 152 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.
26887048 26887048 PRJNA493632_P_NODE_629841_length_243_cov_0.905882_g626400_i0 PRJNA493632 629841 243 0.905882 2.20129326 Fibrobacter sp. 35828 Bacteria Bacteria 75.5 6.7e-14   NR NLL14622.1 35828 g626400 i0 76.5 1.8641975308642 51 12 63 0 243 91 276 326 NLL14622.1 hypothetical protein [Fibrobacter sp.] diamond 453 75.5 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.
28403092 28403092 PRJNA493632_P_NODE_526266_length_250_cov_0.870056_g522827_i0 PRJNA493632 526266 250 0.870056 2.17514 Fibrobacter sp. 35828 Bacteria Bacteria 177 1.04e-50   NR NLL14932.1 35828 g522827 i0 98.8 0.996 83 1 99.6 0 2 250 364 446 NLL14932.1 hypothetical protein [Fibrobacter sp.] diamond 249 177 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.
28434735 28434735 PRJNA493632_P_NODE_615566_length_244_cov_0.900585_g612125_i0 PRJNA493632 615566 244 0.900585 2.1974274 Fibrobacterota bacterium 2052160 Bacteria Bacteria 64.3 6.33e-11   NR MEN9353772.1 2052160 g612125 i0 72.5 0.491803278688525 40 11 49.2 0 124 243 4 43 MEN9353772.1 hypothetical protein [Fibrobacterota bacterium] diamond 120 64.3 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium
29760662 29760662 PRJNA493632_P_NODE_610791_length_244_cov_0.900585_g607350_i0 PRJNA493632 610791 244 0.900585 2.1974274 Fibrobacter sp. 35828 Bacteria Bacteria 143 2.4699999999999993e-40   NR NLP02369.1 35828 g607350 i0 83.8 1.9672131147541 80 13 98.4 0 242 3 56 135 NLP02369.1 hypothetical protein [Fibrobacter sp.] diamond 480 143 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.
31340633 31340633 PRJNA493632_P_NODE_640776_length_242_cov_0.911243_g637335_i0 PRJNA493632 640776 242 0.911243 2.20520806 Fibrobacter sp. 35828 Bacteria Bacteria 67.8 5.69e-11   NR NLL15097.1 35828 g637335 i0 70.2 1.16528925619835 47 14 58.3 0 239 99 1759 1805 NLL15097.1 tetratricopeptide repeat protein [Fibrobacter sp.] diamond 282 67.8 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.
31403996 31403996 PRJNA493632_P_NODE_571436_length_247_cov_0.885057_g567997_i0 PRJNA493632 571436 247 0.885057 2.18609079 Fibrobacterota bacterium 2052160 Bacteria Bacteria 110 6.82e-27   NR MEK7394105.1 2052160 g567997 i0 72.8 0.983805668016194 81 22 98.4 0 247 5 86 166 MEK7394105.1 STAS domain-containing protein [Fibrobacterota bacterium] diamond 243 110 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium
31498885 31498885 PRJNA493632_P_NODE_517496_length_250_cov_2.451977_g514057_i0 PRJNA493632 517496 250 2.451977 6.1299425 Chitinispirillum alkaliphilum 1008392 Bacteria Bacteria 43.9 0.0153   NR KMQ50187.1 1008392 g514057 i0 25.3 0.948 79 58 93.6 1 249 16 77 155 KMQ50187.1 group 1 glycosyl transferase [Chitinispirillum alkaliphilum] diamond 237 43.9 1 Bacteria FCB group Pseudomonadati Fibrobacterota Chitinispirillia Chitinispirillales Chitinispirillaceae Chitinispirillum Chitinispirillum alkaliphilum
31562239 31562239 PRJNA493632_P_NODE_630056_length_243_cov_0.905882_g626615_i0 PRJNA493632 630056 243 0.905882 2.20129326 Fibrobacter sp. 35828 Bacteria Bacteria 159 4e-43   NR NLL14699.1 35828 g626615 i0 98.8 0.987654320987654 80 1 98.8 0 242 3 57 136 NLL14699.1 glycogen/starch/alpha-glucan phosphorylase [Fibrobacter sp.] diamond 240 159 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.
32163276 32163276 PRJNA493632_P_NODE_641658_length_242_cov_0.911243_g638217_i0 PRJNA493632 641658 242 0.911243 2.20520806 Fibrobacter sp. 35828 Bacteria Bacteria 88.6 1.13e-18   NR NLG38581.1 35828 g638217 i0 92.2 0.632231404958678 51 4 63.2 0 8 160 285 335 NLG38581.1 hypothetical protein [Fibrobacter sp.] diamond 153 88.6 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.
32684416 32684416 PRJNA493632_P_NODE_432660_length_265_cov_2.312500_g429221_i0 PRJNA493632 432660 265 2.3125 6.128125 Bacteria 2 Bacteria Bacteria 48.9 1.45e-4   NR KMQ51331.1 1008392 g429221 i0 37.3 1.26792452830189 59 37 66.8 0 182 6 22 80 KMQ51331.1 hypothetical protein CHISP_1814 [Chitinispirillum alkaliphilum] diamond 336 49.3 0.991886409736308 Bacteria FCB group Pseudomonadati Fibrobacterota Chitinispirillia Chitinispirillales Chitinispirillaceae Chitinispirillum Chitinispirillum alkaliphilum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;