RNAquarium Metadata Server
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contig_metadata

12 rows where bioproject = "PRJNA493244" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 12 ✖

tax_clade 1

bioproject 1

  • PRJNA493244 · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1731058 1731058 PRJNA493244_P_NODE_1695702_length_204_cov_1.664336_g1672577_i0 PRJNA493244 1695702 204 1.664336 3.39524544 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 154 4.74e-33   NTclustered gi|300078496|gb|GU001158.1| 5778 g1672577 i0 83.237 88.7156862745098 173 23 83 4 14 183 3650 3819 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 18098 154 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
4282919 4282919 PRJNA493244_P_NODE_1531824_length_235_cov_5.678161_g1508699_i0 PRJNA493244 1531824 235 5.678161 13.34367835 Paraflabellula hoguae 136459 Tubulinea other_Eukaryota 152 2.0199999999999998e-32   NTclustered gi|145386791|gb|EF216916.1| 136459 g1508699 i0 87.97 49.2468085106383 133 11 55 3 24 152 1380 1511 Paraflabellula hoguae 28S large subunit ribosomal RNA gene, partial sequence blastn 11573 152 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Paraflabellula Paraflabellula hoguae
9384350 9384350 PRJNA493244_P_NODE_1716528_length_202_cov_0.907801_g1693403_i0 PRJNA493244 1716528 202 0.907801 1.83375802 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 128 1.29e-33   NR YP_003540836.1 5778 g1693403 i0 95.2 0.920792079207921 62 3 92.1 0 186 1 167 228 YP_003540836.1 apocytochrome b [Vermamoeba vermiformis] diamond 186 128 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
15757905 15757905 PRJNA493244_P_NODE_1260093_length_309_cov_2.008065_g1236969_i0 PRJNA493244 1260093 309 2.008065 6.20492085 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 243 1.6000000000000004e-59   NTclustered gi|909719647|gb|KT185627.1| 5778 g1236969 i0 84.03 1.94174757281553 263 31 84 6 49 309 41708 41455 Vermamoeba vermiformis isolate BCP-EM3VF21-2 mitochondrion, complete genome blastn 600 243 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
15758902 15758902 PRJNA493244_P_NODE_1661333_length_208_cov_2.061224_g1638208_i0 PRJNA493244 1661333 208 2.061224 4.28734592 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 220 4.72e-53   NTclustered gi|511487963|gb|JX898537.1| 1260765 g1638208 i0 88.298 16.4038461538462 188 17 89 5 23 208 70 254 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 3412 220 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
18307529 18307529 PRJNA493244_P_NODE_1530735_length_236_cov_1.171429_g1507610_i0 PRJNA493244 1530735 236 1.171429 2.76457244 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 176 1.1999999999999999e-39   NTclustered gi|909719647|gb|KT185627.1| 5778 g1507610 i0 84.699 3.8771186440678 183 20 76 4 1 180 51225 51402 Vermamoeba vermiformis isolate BCP-EM3VF21-2 mitochondrion, complete genome blastn 915 176 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
22776873 22776873 PRJNA493244_P_NODE_1464678_length_251_cov_2.563158_g1441553_i0 PRJNA493244 1464678 251 2.563158 6.43352658 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 202 2.13e-47   NTclustered gi|292559443|ref|NC_013986.1| 5778 g1441553 i0 82.278 93.2151394422311 237 38 94 4 8 242 27453 27219 Hartmannella vermiformis mitochondrion, complete genome blastn 23397 202 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
27581914 27581914 PRJNA493244_P_NODE_1677304_length_206_cov_2.572414_g1654179_i0 PRJNA493244 1677304 206 2.572414 5.29917284 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 81.6 4.41e-16   NR YP_003540843.1 5778 g1654179 i0 62.5 1.87864077669903 64 24 93.2 0 206 15 43 106 YP_003540843.1 hypothetical protein HaveOM_p32 [Vermamoeba vermiformis] diamond 387 81.6 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
28592431 28592431 PRJNA493244_P_NODE_1731867_length_197_cov_3.470588_g1708742_i0 PRJNA493244 1731867 197 3.470588 6.83705836 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 73.9 2.02e-13   NR AKT93973.1 5778 g1708742 i0 58.6 1.76649746192893 58 24 88.3 0 196 23 344 401 AKT93973.1 NADH dehydrogenase subunit 11 [Vermamoeba vermiformis] diamond 348 73.9 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
29633872 29633872 PRJNA493244_P_NODE_1169050_length_340_cov_1.146953_g1145926_i0 PRJNA493244 1169050 340 1.146953 3.8996402 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 102 2.51e-25   NR AKT93951.1 5778 g1145926 i0 100 0.423529411764706 48 0 42.4 0 8 151 32 79 AKT93951.1 NADH dehydrogenase subunit 3 [Vermamoeba vermiformis] diamond 144 102 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
30771716 30771716 PRJNA493244_P_NODE_1368294_length_277_cov_1.777778_g1345169_i0 PRJNA493244 1368294 277 1.777778 4.92444506 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 127 3.94e-34   NR AKT93954.1 5778 g1345169 i0 98.5 0.714801444043321 66 1 71.5 0 32 229 47 112 AKT93954.1 H(+)-transporting ATPase subunit 6 [Vermamoeba vermiformis] diamond 198 127 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
30929552 30929552 PRJNA493244_P_NODE_783954_length_516_cov_2.643956_g761332_i0 PRJNA493244 783954 516 2.643956 13.64281296 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 139 1.01e-34   NR YP_003540844.1 5778 g761332 i0 54.9 0.825581395348837 142 64 82.6 0 452 27 404 545 YP_003540844.1 hypothetical protein HaveOM_p33 [Vermamoeba vermiformis] diamond 426 139 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;