RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA493244" and tax_phylum = "Synergistota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Synergistota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA493244 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8110524 8110524 PRJNA493244_P_NODE_702107_length_567_cov_4.322134_g679824_i0 PRJNA493244 702107 567 4.322134 24.50649978 Fretibacterium fastidiosum 651822 Bacteria Bacteria 610 7.36e-170   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g679824 i0 87.293 86.8783068783069 543 58 95 11 6 543 68364 68900 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 49260 610 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
26696519 26696519 PRJNA493244_P_NODE_1574281_length_226_cov_1.551515_g1551156_i0 PRJNA493244 1574281 226 1.551515 3.5064239 Synergistaceae bacterium 2053624 Bacteria Bacteria 76.3 8.11e-16   NR MEG1502259.1 2053624 g1551156 i0 51.4 0.955752212389381 72 27 95.6 1 9 224 19 82 MEG1502259.1 hypothetical protein [Synergistaceae bacterium] diamond 216 76.3 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
32636909 32636909 PRJNA493244_P_NODE_1675680_length_207_cov_0.876712_g1652555_i0 PRJNA493244 1675680 207 0.876712 1.81479384 Synergistaceae bacterium 2053624 Bacteria Bacteria 43.9 0.00833   NR NLI95124.1 2053624 g1652555 i0 40.3 0.971014492753623 67 32 97.1 3 3 203 173 231 NLI95124.1 trehalose-phosphatase [Synergistaceae bacterium] diamond 201 43.9 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;