RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

22 rows where bioproject = "PRJNA493244" and tax_phylum = "Apicomplexa"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 22 ✖

tax_clade 1

bioproject 1

  • PRJNA493244 · 22 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4284176 4284176 PRJNA493244_P_NODE_515904_length_713_cov_13.671779_g495507_i0 PRJNA493244 515904 713 13.671779 97.47978427 Cryptosporidium parvum 5807 SAR_Eukaryotes SAR_Eukaryotes 193 4.03e-44   NTclustered gi|2560612139|gb|OR419798.1| 5807 g495507 i0 84.422 24.741935483871 199 27 28 4 8 204 3983 3787 Cryptosporidium parvum small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 17641 193 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium parvum
6203130 6203130 PRJNA493244_P_NODE_1684865_length_205_cov_4.625000_g1661740_i0 PRJNA493244 1684865 205 4.625 9.48125 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.018   NTclustered gi|1145260673|ref|XM_012908331.2| 5854 g1661740 i0 100 0.712195121951219 28 0 14 0 121 148 1156 1129 Plasmodium reichenowi protein phosphatase 2C partial mRNA blastn 146 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium reichenowi
6833877 6833877 PRJNA493244_P_NODE_1660706_length_208_cov_2.612245_g1637581_i0 PRJNA493244 1660706 208 2.612245 5.4334696 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 82.4 2.32e-11   NTclustered gi|2592695277|gb|CP131979.1| 5833 g1637581 i0 87.5 43.2307692307692 72 7 34 2 93 163 26351 26281 Plasmodium falciparum strain W2 apicoplast, complete genome blastn 8992 82.4 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
7478227 7478227 PRJNA493244_P_NODE_915726_length_446_cov_1.974026_g892747_i0 PRJNA493244 915726 446 1.974026 8.80415596 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 143 2.4899999999999996e-29   NTclustered gi|1270519481|ref|XM_022955661.1| 5861 g892747 i0 75.155 4.17264573991031 322 70 71 8 130 446 2087 1771 Plasmodium yoelii heat shock protein 90, putative (PY17X_0808800), partial mRNA blastn 1861 143 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium yoelii
10658755 10658755 PRJNA493244_P_NODE_115269_length_1459_cov_19.281116_g107485_i0 PRJNA493244 115269 1459 19.281116 281.31148244 Plasmodium yoelii 5861 SAR_Eukaryotes SAR_Eukaryotes 80.5 6.87e-10   NTclustered gi|1270518705|ref|XM_022955346.1| 5861 g107485 i0 84.706 0.337217272104181 85 7 6 3 865 946 1263 1182 Plasmodium yoelii high mobility group protein B3, putative (PY17X_0607000), partial mRNA blastn 492 80.5 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium yoelii
10661065 10661065 PRJNA493244_P_NODE_637629_length_612_cov_3.343013_g615761_i0 PRJNA493244 637629 612 3.343013 20.45923956 Plasmodium gaboni 647221 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.017   NTclustered gi|1084792884|ref|XM_018784333.1| 647221 g615761 i0 96.97 0.053921568627451 33 0 5 1 373 404 1181 1149 Plasmodium gaboni UDP-N-acetyl glucosamine:UMP antiporter partial mRNA blastn 33 54.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium gaboni
11934147 11934147 PRJNA493244_P_NODE_1395670_length_269_cov_3.403846_g1372545_i0 PRJNA493244 1395670 269 3.403846 9.15634574 Anthozoaphila gnarlus 2783686 SAR_Eukaryotes SAR_Eukaryotes 71.3 6.8e-8   NTclustered gi|2887160894|gb|PQ872229.1| 2783686 g1372545 i0 88.333 13.1338289962825 60 6 22 1 207 265 316 375 Anthozoaphila gnarlus isolate GZ0315 large subunit ribosomal RNA gene, partial sequence blastn 3533 71.3 1 Eukaryota Sar   Apicomplexa Conoidasida Corallicolida Corallicolidae Anthozoaphila Anthozoaphila gnarlus
11934550 11934550 PRJNA493244_P_NODE_1553790_length_230_cov_5.763314_g1530665_i0 PRJNA493244 1553790 230 5.763314 13.2556222 Eimeria mitis 44415 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.021   NTclustered gi|916512336|ref|XM_013500880.1| 44415 g1530665 i0 100 0.121739130434783 28 0 12 0 182 209 824 851 Eimeria mitis SWI/SNF-related matrix-associated actin-dependent regulator of chromatin, putative (EMH_0084120), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria mitis
13209018 13209018 PRJNA493244_P_NODE_1278551_length_303_cov_2.867769_g1255427_i0 PRJNA493244 1278551 303 2.867769 8.68934007 Theileria parva 5875 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.028   NTclustered gi|2626849155|ref|XM_759803.2| 333668 g1255427 i0 100 0.0924092409240924 28 0 9 0 205 232 766 739 Theileria parva strain Muguga emp24/gp25L/p24 family/GOLD family protein (TpMuguga_02g00330), mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Theileriidae Theileria Theileria parva
13853596 13853596 PRJNA493244_P_NODE_1718331_length_201_cov_15.285714_g1695206_i0 PRJNA493244 1718331 201 15.285714 30.72428514 Cryptosporidium 5806 SAR_Eukaryotes SAR_Eukaryotes 60.2 1.04e-4   NTclustered gi|187936413|gb|EU676365.1| 526370 g1695206 i0 100 202.039800995025 32 0 16 0 1 32 227 258 Cryptosporidium sp. cat104 18S ribosomal RNA gene, partial sequence blastn 40610 60.2 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium sp. cat104
16402693 16402693 PRJNA493244_P_NODE_685273_length_578_cov_6.791103_g663081_i0 PRJNA493244 685273 578 6.791103 39.25257534 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 198 6.93e-46   NTclustered gi|505337|gb|L34027.1|PFAHSP86A 5833 g663081 i0 81.452 6.5795847750865 248 40 43 5 2 247 2955 2712 Plasmodium falciparum (clone Dd2) heat shock protein 86 gene, complete cds blastn 3803 198 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
18951524 18951524 PRJNA493244_P_NODE_1717215_length_202_cov_0.907801_g1694090_i0 PRJNA493244 1717215 202 0.907801 1.83375802 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.005   NTclustered gi|1084885422|ref|XM_018786694.1| 647221 g1694090 i0 90.698 0.356435643564356 43 1 20 1 130 169 1378 1336 Plasmodium gaboni putative zinc finger protein partial mRNA blastn 72 54.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium gaboni
19582263 19582263 PRJNA493244_P_NODE_1714736_length_202_cov_0.907801_g1691611_i0 PRJNA493244 1714736 202 0.907801 1.83375802 Babesia ovata 189622 SAR_Eukaryotes SAR_Eukaryotes 187 4.62e-43   NTclustered gi|1624698156|ref|XM_029013946.1| 189622 g1691611 i0 83.663 10.6633663366337 202 30 100 2 1 202 146 344 Babesia ovata CTP synthase, putative (BOVATA_050290), partial mRNA blastn 2154 187 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia ovata
19582476 19582476 PRJNA493244_P_NODE_211756_length_1153_cov_25.962454_g199538_i0 PRJNA493244 211756 1153 25.962454 299.34709462 Babesia ovata 189622 SAR_Eukaryotes SAR_Eukaryotes 1766 0   NTclustered gi|1624698158|ref|XM_029013947.1| 189622 g199538 i0 95.963 1486.73547267997 1090 40 94 4 67 1153 1914 826 Babesia ovata endonuclease-reverse transcriptase (BOVATA_050300), partial mRNA blastn 1714206 1766 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia ovata
20858491 20858491 PRJNA493244_P_NODE_316697_length_952_cov_9.815937_g300747_i0 PRJNA493244 316697 952 9.815937 93.44772024 Eimeria maxima 5804 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.027   NTclustered gi|915138890|ref|XM_013481593.1| 5804 g300747 i0 94.286 0.0367647058823529 35 2 4 0 295 329 1932 1898 Eimeria maxima Tyrosine kinase-like (TKL) protein, putative partial mRNA blastn 35 54.7 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria maxima
22132435 22132435 PRJNA493244_P_NODE_1547958_length_232_cov_1.421053_g1524833_i0 PRJNA493244 1547958 232 1.421053 3.29684296 Babesia ovata 189622 SAR_Eukaryotes SAR_Eukaryotes 316 6.66e-82   NTclustered gi|1624698156|ref|XM_029013946.1| 189622 g1524833 i0 92.105 23.9655172413793 228 13 98 4 1 228 68 290 Babesia ovata CTP synthase, putative (BOVATA_050290), partial mRNA blastn 5560 316 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia ovata
22133214 22133214 PRJNA493244_P_NODE_257538_length_1055_cov_7.849095_g199538_i1 PRJNA493244 257538 1055 7.849095 82.80795225 Babesia ovata 189622 SAR_Eukaryotes SAR_Eukaryotes 1757 0   NTclustered gi|1624698158|ref|XM_029013947.1| 189622 g199538 i1 96.78 926.789573459716 1056 29 99 3 1 1053 1217 164 Babesia ovata endonuclease-reverse transcriptase (BOVATA_050300), partial mRNA blastn 977763 1757 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia ovata
24682103 24682103 PRJNA493244_P_NODE_1621040_length_216_cov_1.522581_g1597915_i0 PRJNA493244 1621040 216 1.522581 3.28877496 Babesia ovata 189622 SAR_Eukaryotes SAR_Eukaryotes 327 2.83e-85   NTclustered gi|1624698156|ref|XM_029013946.1| 189622 g1597915 i0 94.419 30.4537037037037 215 9 99 3 1 215 490 279 Babesia ovata CTP synthase, putative (BOVATA_050290), partial mRNA blastn 6578 327 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia ovata
24683249 24683249 PRJNA493244_P_NODE_619780_length_625_cov_10.097518_g598063_i0 PRJNA493244 619780 625 10.097518 63.1094875 Cystoisospora felis 482539 SAR_Eukaryotes SAR_Eukaryotes 161 9.879999999999999e-35   NTclustered gi|3323386|gb|U85705.1|IFU85705 482539 g598063 i0 92.105 18.2336 114 9 18 0 191 304 2037 1924 Isospora felis 28S large subunit ribosomal RNA gene, complete sequence blastn 11396 161 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Cystoisospora Cystoisospora felis
27313856 27313856 PRJNA493244_P_NODE_446403_length_783_cov_53.458449_g427242_i0 PRJNA493244 446403 783 53.458449 418.57965567 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 97.8 2.41e-20   NR OLQ18173.1 237895 g427242 i0 44.2 4.95785440613027 120 60 43.3 1 750 412 1 120 OLQ18173.1 ribosomal protein S10 [Cryptosporidium hominis] diamond 3882 97.8 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium hominis
27992555 27992555 PRJNA493244_P_NODE_1345345_length_283_cov_5.009009_g1322221_i0 PRJNA493244 1345345 283 5.009009 14.17549547 Cryptosporidium bovis 310047 SAR_Eukaryotes SAR_Eukaryotes 43.9 0.0238   NR XP_067181760.1 310047 g1322221 i0 46.2 0.551236749116608 52 26 53 1 159 10 370 421 XP_067181760.1 interaptin [Cryptosporidium bovis] diamond 156 43.9 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium bovis
32115701 32115701 PRJNA493244_P_NODE_1325238_length_289_cov_2.570175_g1302114_i0 PRJNA493244 1325238 289 2.570175 7.42780575 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 61.2 4.28e-9   NR XP_067924299.1 483139 g1302114 i0 58.2 5.06574394463668 55 20 54 1 194 39 121 175 XP_067924299.1 ribosomal protein rpl23a [Cystoisospora suis] diamond 1464 61.2 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Cystoisospora Cystoisospora suis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;