contig_metadata
43 rows where bioproject = "PRJNA493244", tax_kingdom = "Pseudomonadati" and tax_phylum = "Spirochaetota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3650993 | 3650993 | PRJNA493244_P_NODE_1568223_length_227_cov_2.246988_g1545098_i0 | PRJNA493244 | 1568223 | 227 | 2.246988 | 5.10066276 | Treponema | 157 | Bacteria | Bacteria | 228 | 3.129999999999999e-55 | NTclustered | gi|332179772|gb|CP002696.1| | 906968 | g1545098 | i0 | 86.73 | 59.9030837004405 | 211 | 21 | 91 | 7 | 1 | 207 | 430037 | 429830 | Treponema brennaborense DSM 12168, complete genome | blastn | 13598 | 228 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema brennaborense | ||
| 4282377 | 4282377 | PRJNA493244_P_NODE_1321424_length_290_cov_3.248908_g1298300_i0 | PRJNA493244 | 1321424 | 290 | 3.248908 | 9.4218332 | Spirochaetota bacterium | 2202144 | Bacteria | Bacteria | 143 | 1.5999999999999996e-41 | NR | TXG85209.1 | 2202144 | g1298300 | i0 | 94.4 | 0.73448275862069 | 71 | 4 | 73.4 | 0 | 229 | 17 | 11 | 81 | TXG85209.1 MAG: hypothetical protein E6R13_02270 [Spirochaetota bacterium] | diamond | 213 | 143 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetota bacterium | ||||||
| 5558651 | 5558651 | PRJNA493244_P_NODE_1190505_length_332_cov_2.184502_g1167381_i0 | PRJNA493244 | 1190505 | 332 | 2.184502 | 7.25254664 | Treponema denticola | 158 | Bacteria | Bacteria | 573 | 5.399999999999999e-159 | NTclustered | gi|2265172126|gb|CP051522.1| | 158 | g1167381 | i0 | 99.681 | 5.6566265060241 | 313 | 1 | 94 | 0 | 20 | 332 | 1927590 | 1927902 | Treponema denticola strain OMZ 910 chromosome, complete genome | blastn | 1878 | 573 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema denticola | ||
| 7477602 | 7477602 | PRJNA493244_P_NODE_1087466_length_370_cov_2.744337_g1064345_i0 | PRJNA493244 | 1087466 | 370 | 2.744337 | 10.1540469 | Treponema | 157 | Bacteria | Bacteria | 566 | 1.0199999999999999e-156 | NTclustered | gi|719625061|gb|CP009227.1| | 1539298 | g1064345 | i0 | 96 | 187.448648648649 | 350 | 11 | 95 | 2 | 21 | 370 | 1285404 | 1285750 | Treponema sp. OMZ 838, complete genome | blastn | 69356 | 566 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. OMZ 838 | ||
| 8108922 | 8108922 | PRJNA493244_P_NODE_1492687_length_244_cov_17.120219_g1469562_i0 | PRJNA493244 | 1492687 | 244 | 17.120219 | 41.77333436 | Treponema medium | 58231 | Bacteria | Bacteria | 398 | 2.4499999999999996e-106 | NTclustered | gi|1996296230|gb|CP031393.1| | 58231 | g1469562 | i0 | 99.095 | 186.627049180328 | 221 | 2 | 91 | 0 | 24 | 244 | 1012704 | 1012924 | Treponema medium strain ATCC 700293 chromosome, complete genome | blastn | 45537 | 398 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema medium | ||
| 12578683 | 12578683 | PRJNA493244_P_NODE_1408510_length_266_cov_1.560976_g1385385_i0 | PRJNA493244 | 1408510 | 266 | 1.560976 | 4.15219616 | Treponema | 157 | Bacteria | Bacteria | 484 | 2.0199999999999998e-132 | NTclustered | gi|2265193197|gb|CP058347.1| | 158 | g1385385 | i0 | 99.624 | 13 | 266 | 0 | 100 | 1 | 1 | 266 | 1877149 | 1876885 | Treponema denticola strain OKA3 chromosome, complete genome | blastn | 3458 | 484 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema denticola | ||
| 17677470 | 17677470 | PRJNA493244_P_NODE_1448194_length_255_cov_7.572165_g1425069_i0 | PRJNA493244 | 1448194 | 255 | 7.572165 | 19.30902075 | Treponema | 157 | Bacteria | Bacteria | 416 | 7.129999999999998e-112 | NTclustered | gi|1807378492|gb|CP048020.1| | 69710 | g1425069 | i0 | 98.312 | 181.011764705882 | 237 | 4 | 93 | 0 | 19 | 255 | 2079610 | 2079374 | Treponema vincentii strain OMZ 804 chromosome, complete genome | blastn | 46158 | 416 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema vincentii | ||
| 18307791 | 18307791 | PRJNA493244_P_NODE_1640235_length_212_cov_1.562914_g1617110_i0 | PRJNA493244 | 1640235 | 212 | 1.562914 | 3.31337768 | Treponema sp. Marseille-Q4132 | 2766701 | Bacteria | Bacteria | 195 | 2.9299999999999997e-45 | NTclustered | gi|1897717435|gb|CP060591.1| | 2766701 | g1617110 | i0 | 92.593 | 0.636792452830189 | 135 | 10 | 64 | 0 | 1 | 135 | 598607 | 598473 | Treponema sp. Marseille-Q4132 chromosome | blastn | 135 | 195 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. Marseille-Q4132 | ||
| 18951350 | 18951350 | PRJNA493244_P_NODE_1485935_length_246_cov_1.956757_g1462810_i0 | PRJNA493244 | 1485935 | 246 | 1.956757 | 4.81362222 | Treponema | 157 | Bacteria | Bacteria | 422 | 1.47e-113 | NTclustered | gi|2265193197|gb|CP058347.1| | 158 | g1462810 | i0 | 100 | 22.2317073170732 | 228 | 0 | 93 | 0 | 1 | 228 | 221324 | 221097 | Treponema denticola strain OKA3 chromosome, complete genome | blastn | 5469 | 422 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema denticola | ||
| 18951364 | 18951364 | PRJNA493244_P_NODE_1509955_length_240_cov_29.592179_g1486830_i0 | PRJNA493244 | 1509955 | 240 | 29.592179 | 71.0212296 | Treponema | 157 | Bacteria | Bacteria | 246 | 9.23e-61 | NTclustered | gi|1928027651|gb|CP061839.1| | 409322 | g1486830 | i0 | 87.215 | 161.379166666667 | 219 | 25 | 90 | 3 | 1 | 217 | 388042 | 387825 | Treponema pedis strain KS1 chromosome, complete genome | blastn | 38731 | 246 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema pedis | ||
| 18951616 | 18951616 | PRJNA493244_P_NODE_489955_length_738_cov_9.429838_g469988_i0 | PRJNA493244 | 489955 | 738 | 9.429838 | 69.59220444 | Treponema | 157 | Bacteria | Bacteria | 1317 | 0 | NTclustered | gi|2265136109|gb|CP051197.1| | 69710 | g469988 | i0 | 98.916 | 195.539295392954 | 738 | 6 | 100 | 1 | 1 | 738 | 326063 | 325328 | Treponema vincentii strain OMZ 802 chromosome, complete genome | blastn | 144308 | 1319 | 0.998483699772555 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema vincentii | ||
| 19581032 | 19581032 | PRJNA493244_P_NODE_1217776_length_323_cov_1.423664_g1194652_i0 | PRJNA493244 | 1217776 | 323 | 1.423664 | 4.59843472 | Treponema parvum | 138851 | Bacteria | Bacteria | 381 | 3.409999999999999e-101 | NTclustered | gi|2023444933|gb|CP054257.1| | 138851 | g1194652 | i0 | 88.924 | 185.306501547988 | 316 | 26 | 96 | 8 | 13 | 323 | 1517963 | 1517652 | Treponema parvum strain ATCC 700773 chromosome, complete genome | blastn | 59854 | 381 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema parvum | ||
| 19582678 | 19582678 | PRJNA493244_P_NODE_322456_length_944_cov_1.945640_g306331_i0 | PRJNA493244 | 322456 | 944 | 1.94564 | 18.3668416 | Oceanispirochaeta crateris | 2518645 | Bacteria | Bacteria | 102 | 9.35e-17 | NTclustered | gi|1735511476|gb|CP036150.1| | 2518645 | g306331 | i0 | 92.857 | 2.86758474576271 | 70 | 5 | 7 | 0 | 862 | 931 | 2574412 | 2574481 | Oceanispirochaeta crateris strain K2 chromosome, complete genome | blastn | 2707 | 102 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Spirochaetaceae | Oceanispirochaeta | Oceanispirochaeta crateris | ||
| 20856493 | 20856493 | PRJNA493244_P_NODE_1064177_length_380_cov_1.103448_g1041060_i0 | PRJNA493244 | 1064177 | 380 | 1.103448 | 4.1931024 | Treponema sp. Marseille-Q4132 | 2766701 | Bacteria | Bacteria | 409 | 1.87e-109 | NTclustered | gi|1897717435|gb|CP060591.1| | 2766701 | g1041060 | i0 | 86.162 | 3.02894736842105 | 383 | 47 | 100 | 3 | 1 | 380 | 598653 | 599032 | Treponema sp. Marseille-Q4132 chromosome | blastn | 1151 | 409 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. Marseille-Q4132 | ||
| 20858670 | 20858670 | PRJNA493244_P_NODE_430137_length_802_cov_2.631579_g411301_i0 | PRJNA493244 | 430137 | 802 | 2.631579 | 21.10526358 | Borreliella spielmanii | 88916 | Bacteria | Bacteria | 54.7 | 0.022 | NTclustered | gi|2537422926|gb|CP124042.1| | 88916 | g411301 | i0 | 96.875 | 0.0399002493765586 | 32 | 1 | 4 | 0 | 570 | 601 | 717139 | 717170 | Borreliella spielmanii strain Pmew chromosome, complete genome | blastn | 32 | 54.7 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Borreliaceae | Borreliella | Borreliella spielmanii | ||
| 22132167 | 22132167 | PRJNA493244_P_NODE_1444718_length_256_cov_3.425641_g1421593_i0 | PRJNA493244 | 1444718 | 256 | 3.425641 | 8.76964096 | Treponemataceae bacterium | 2854022 | Bacteria | Bacteria | 340 | 4.44e-89 | NTclustered | gi|2814788384|emb|OY762953.2| | 2854022 | g1421593 | i0 | 93.45 | 128.52734375 | 229 | 15 | 89 | 0 | 1 | 229 | 1490431 | 1490203 | MAG: Treponemataceae bacterium isolate a6accef0-0fd1-414a-935d-742eec6b5613 genome assembly, chromosome: 1 | blastn | 32903 | 340 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponemataceae bacterium | |||
| 25326145 | 25326145 | PRJNA493244_P_NODE_1622940_length_215_cov_5.292208_g1599815_i0 | PRJNA493244 | 1622940 | 215 | 5.292208 | 11.3782472 | Treponema | 157 | Bacteria | Bacteria | 257 | 3.74e-64 | NTclustered | gi|470488561|ref|NR_076878.1| | 81028 | g1599815 | i0 | 89.706 | 157.172093023256 | 204 | 17 | 94 | 4 | 13 | 215 | 338 | 538 | Treponema brennaborense strain DD5/3 23S ribosomal RNA gene, complete sequence | blastn | 33792 | 257 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema brennaborense | ||
| 26727873 | 26727873 | PRJNA493244_P_NODE_673301_length_587_cov_1.427757_g651200_i0 | PRJNA493244 | 673301 | 587 | 1.427757 | 8.38093359 | Spirochaetota bacterium | 2202144 | Bacteria | Bacteria | 361 | 2.8199999999999997e-125 | NR | TXG85206.1 | 2202144 | g651200 | i0 | 97.2 | 0.904599659284497 | 177 | 5 | 90.5 | 0 | 3 | 533 | 19 | 195 | TXG85206.1 MAG: hypothetical protein E6R13_02255 [Spirochaetota bacterium] | diamond | 531 | 361 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetota bacterium | ||||||
| 27171076 | 27171076 | PRJNA493244_P_NODE_1151222_length_346_cov_2.112281_g1128098_i0 | PRJNA493244 | 1151222 | 346 | 2.112281 | 7.30849226 | Spirochaetota bacterium | 2202144 | Bacteria | Bacteria | 147 | 7.03e-41 | NR | TXG85205.1 | 2202144 | g1128098 | i0 | 80.9 | 0.815028901734104 | 94 | 18 | 81.5 | 0 | 65 | 346 | 1 | 94 | TXG85205.1 MAG: WYL domain-containing transcriptional regulator [Spirochaetota bacterium] | diamond | 282 | 147 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetota bacterium | ||||||
| 27282136 | 27282136 | PRJNA493244_P_NODE_1003583_length_405_cov_3.244186_g980490_i0 | PRJNA493244 | 1003583 | 405 | 3.244186 | 13.1389533 | Treponema | 157 | Bacteria | Bacteria | 71.2 | 8.72e-12 | NR | WP_206183207.1 | 409322 | g980490 | i0 | 42.2 | 1.88148148148148 | 128 | 57 | 88.9 | 6 | 403 | 44 | 68 | 186 | WP_206183207.1 pseudouridine synthase [Treponema pedis] | diamond | 762 | 71.2 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema pedis | ||
| 27313847 | 27313847 | PRJNA493244_P_NODE_1449403_length_255_cov_2.015464_g1426278_i0 | PRJNA493244 | 1449403 | 255 | 2.015464 | 5.1394332 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 89 | 2.12e-18 | NR | WP_002666515.1 | 158 | g1426278 | i0 | 78.3 | 2.15294117647059 | 46 | 10 | 54.1 | 0 | 254 | 117 | 284 | 329 | WP_002666515.1 glutamate--tRNA ligase [Treponema denticola] | diamond | 549 | 89 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema denticola | ||
| 27613689 | 27613689 | PRJNA493244_P_NODE_1136084_length_352_cov_0.879725_g1112962_i0 | PRJNA493244 | 1136084 | 352 | 0.879725 | 3.096632 | Spirochaetia bacterium | 2053615 | Bacteria | Bacteria | 140 | 1.58e-37 | NR | GHT76121.1 | 2053615 | g1112962 | i0 | 60.2 | 0.963068181818182 | 113 | 45 | 96.3 | 0 | 340 | 2 | 170 | 282 | GHT76121.1 hypothetical protein FACS1894124_8130 [Spirochaetia bacterium] | diamond | 339 | 140 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetia bacterium | |||||
| 27945301 | 27945301 | PRJNA493244_P_NODE_783505_length_516_cov_4.028571_g760883_i0 | PRJNA493244 | 783505 | 516 | 4.028571 | 20.78742636 | Rectinema | 1937016 | Bacteria | Bacteria | 291 | 2.81e-90 | NR | OQB95945.1 | 1852908 | g760883 | i0 | 89.2 | 1.80813953488372 | 158 | 17 | 91.9 | 0 | 507 | 34 | 528 | 685 | OQB95945.1 MAG: Coenzyme A disulfide reductase [Spirochaetes bacterium ADurb.Bin110] | diamond | 933 | 291 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetes bacterium ADurb.Bin110 | ||||||
| 28134834 | 28134834 | PRJNA493244_P_NODE_1133945_length_352_cov_4.264605_g1110823_i0 | PRJNA493244 | 1133945 | 352 | 4.264605 | 15.0114096 | Treponema | 157 | Bacteria | Bacteria | 49.7 | 4.34e-4 | NR | WP_002679979.1 | 157 | g1110823 | i0 | 42.2 | 2.48011363636364 | 45 | 26 | 38.4 | 0 | 136 | 2 | 52 | 96 | WP_002679979.1 MULTISPECIES: formylglycine-generating enzyme family protein [Treponema] | diamond | 873 | 49.7 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | |||
| 29097674 | 29097674 | PRJNA493244_P_NODE_619908_length_625_cov_6.485816_g598191_i0 | PRJNA493244 | 619908 | 625 | 6.485816 | 40.53635 | Spirochaetales bacterium | 2026792 | Bacteria | Bacteria | 157 | 1.46e-44 | NR | MBT89930.1 | 2026792 | g598191 | i0 | 55.4 | 0.5808 | 121 | 53 | 57.6 | 1 | 364 | 5 | 4 | 124 | MBT89930.1 imidazole glycerol phosphate synthase subunit HisH [Spirochaetales bacterium] | diamond | 363 | 157 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Spirochaetales bacterium | ||||
| 29744709 | 29744709 | PRJNA493244_P_NODE_1452090_length_254_cov_8.414508_g1428965_i0 | PRJNA493244 | 1452090 | 254 | 8.414508 | 21.37285032 | root | 1 | Root_unresolved | Root_unresolved | 51.6 | 3.18e-5 | NR | MCL2834550.1 | 166 | g1428965 | i0 | 67.6 | 14.4212598425197 | 34 | 11 | 40.2 | 0 | 230 | 129 | 557 | 590 | MCL2834550.1 ABC transporter ATP-binding protein/permease [Treponema sp.] | diamond | 3663 | 52 | 0.992307692307692 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. | ||
| 29823482 | 29823482 | PRJNA493244_P_NODE_1017711_length_399_cov_2.609467_g994611_i0 | PRJNA493244 | 1017711 | 399 | 2.609467 | 10.41177333 | Spirochaetota bacterium | 2202144 | Bacteria | Bacteria | 75.5 | 8.04e-13 | NR | TXG84646.1 | 2202144 | g994611 | i0 | 36.1 | 1 | 133 | 73 | 98.5 | 4 | 398 | 6 | 150 | 272 | TXG84646.1 MAG: hypothetical protein E6R13_02910 [Spirochaetota bacterium] | diamond | 399 | 75.5 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetota bacterium | ||||||
| 30408688 | 30408688 | PRJNA493244_P_NODE_1494393_length_244_cov_1.863388_g1471268_i0 | PRJNA493244 | 1494393 | 244 | 1.863388 | 4.54666672 | Bacteria | 2 | Bacteria | Bacteria | 41.2 | 0.0289 | NR | WP_085169531.1 | 159 | g1471268 | i0 | 64.5 | 0.762295081967213 | 31 | 11 | 38.1 | 0 | 233 | 141 | 25 | 55 | WP_085169531.1 hypothetical protein [Brachyspira hyodysenteriae] | diamond | 186 | 41.6 | 0.990384615384615 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Brachyspirales | Brachyspiraceae | Brachyspira | Brachyspira hyodysenteriae | ||
| 30456026 | 30456026 | PRJNA493244_P_NODE_880573_length_463_cov_6.686567_g857648_i0 | PRJNA493244 | 880573 | 463 | 6.686567 | 30.95880521 | Spirochaetaceae bacterium | 1898206 | Bacteria | Bacteria | 223 | 1.49e-71 | NR | MBQ7612067.1 | 1898206 | g857648 | i0 | 84 | 3.23974082073434 | 125 | 20 | 81 | 0 | 384 | 10 | 1 | 125 | MBQ7612067.1 iron-sulfur cluster assembly scaffold protein [Spirochaetaceae bacterium] | diamond | 1500 | 223 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Spirochaetaceae | Spirochaetaceae bacterium | |||
| 30487257 | 30487257 | PRJNA493244_P_NODE_1047753_length_386_cov_3.452308_g1024640_i0 | PRJNA493244 | 1047753 | 386 | 3.452308 | 13.32590888 | Spirochaetota bacterium | 2202144 | Bacteria | Bacteria | 209 | 1.45e-64 | NR | TXG85205.1 | 2202144 | g1024640 | i0 | 78.9 | 0.994818652849741 | 128 | 27 | 99.5 | 0 | 3 | 386 | 122 | 249 | TXG85205.1 MAG: WYL domain-containing transcriptional regulator [Spirochaetota bacterium] | diamond | 384 | 209 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetota bacterium | ||||||
| 30739957 | 30739957 | PRJNA493244_P_NODE_1641174_length_212_cov_1.271523_g1618049_i0 | PRJNA493244 | 1641174 | 212 | 1.271523 | 2.69562876 | Spirochaetia bacterium | 2053615 | Bacteria | Bacteria | 61.2 | 6.91e-9 | NR | GHT76121.1 | 2053615 | g1618049 | i0 | 46.9 | 0.905660377358491 | 64 | 34 | 90.6 | 0 | 3 | 194 | 89 | 152 | GHT76121.1 hypothetical protein FACS1894124_8130 [Spirochaetia bacterium] | diamond | 192 | 61.2 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetia bacterium | |||||
| 31435197 | 31435197 | PRJNA493244_P_NODE_1117396_length_358_cov_8.309764_g1094274_i0 | PRJNA493244 | 1117396 | 358 | 8.309764 | 29.74895512 | Treponema sp. | 166 | Bacteria | Bacteria | 49.7 | 1.57e-4 | NR | MDR1804528.1 | 166 | g1094274 | i0 | 31.9 | 0.972067039106145 | 116 | 51 | 83 | 3 | 46 | 342 | 33 | 137 | MDR1804528.1 Hsp20/alpha crystallin family protein [Treponema sp.] | diamond | 348 | 49.7 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. | ||
| 31498740 | 31498740 | PRJNA493244_P_NODE_822836_length_494_cov_2.866051_g800079_i0 | PRJNA493244 | 822836 | 494 | 2.866051 | 14.15829194 | Treponema sp. Marseille-Q4523 | 2810610 | Bacteria | Bacteria | 89 | 5.46e-18 | NR | WP_205076205.1 | 2810610 | g800079 | i0 | 43.3 | 2.18623481781377 | 120 | 68 | 72.9 | 0 | 18 | 377 | 147 | 266 | WP_205076205.1 Rpn family recombination-promoting nuclease/putative transposase [Treponema sp. Marseille-Q4523] | diamond | 1080 | 89 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. Marseille-Q4523 | ||
| 31530374 | 31530374 | PRJNA493244_P_NODE_1126716_length_355_cov_2.258503_g1103594_i0 | PRJNA493244 | 1126716 | 355 | 2.258503 | 8.01768565 | Leptospiraceae bacterium | 2026757 | Bacteria | Bacteria | 82 | 1.22e-15 | NR | MCB1175974.1 | 2026757 | g1103594 | i0 | 37.9 | 0.980281690140845 | 116 | 70 | 96.3 | 2 | 354 | 13 | 151 | 266 | MCB1175974.1 type III PLP-dependent enzyme [Leptospiraceae bacterium] | diamond | 348 | 82 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Leptospirales | Leptospiraceae | Leptospiraceae bacterium | |||
| 31688260 | 31688260 | PRJNA493244_P_NODE_1341177_length_285_cov_1.142857_g1318053_i0 | PRJNA493244 | 1341177 | 285 | 1.142857 | 3.25714245 | Treponema sp. OMZ 788 | 2563664 | Bacteria | Bacteria | 94.7 | 4.2e-21 | NR | WP_253678271.1 | 2563664 | g1318053 | i0 | 49.4 | 3.48421052631579 | 81 | 41 | 85.3 | 0 | 245 | 3 | 116 | 196 | WP_253678271.1 ComF family protein [Treponema sp. OMZ 788] | diamond | 993 | 94.7 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. OMZ 788 | ||
| 31751475 | 31751475 | PRJNA493244_P_NODE_1365997_length_278_cov_1.129032_g1342872_i0 | PRJNA493244 | 1365997 | 278 | 1.129032 | 3.13870896 | Leptospiraceae bacterium | 2026757 | Bacteria | Bacteria | 96.3 | 1.1200000000000001e-22 | NR | HMV44079.1 | 2026757 | g1342872 | i0 | 67.2 | 1.43525179856115 | 67 | 22 | 72.3 | 0 | 278 | 78 | 114 | 180 | HMV44079.1 hypothetical protein [Leptospiraceae bacterium] | diamond | 399 | 96.3 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Leptospirales | Leptospiraceae | Leptospiraceae bacterium | |||
| 31751504 | 31751504 | PRJNA493244_P_NODE_599597_length_641_cov_4.137931_g578069_i0 | PRJNA493244 | 599597 | 641 | 4.137931 | 26.52413771 | unclassified Treponema | 2638727 | Bacteria | Bacteria | 135 | 3.6399999999999997e-34 | NR | WP_253691765.1 | 2638727 | g578069 | i0 | 55.3 | 2.99063962558502 | 150 | 57 | 66.9 | 4 | 35 | 463 | 3 | 149 | WP_253691765.1 MULTISPECIES: LysM peptidoglycan-binding domain-containing protein [unclassified Treponema] | diamond | 1917 | 135 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | |||
| 32004740 | 32004740 | PRJNA493244_P_NODE_1684458_length_206_cov_0.882759_g1661333_i0 | PRJNA493244 | 1684458 | 206 | 0.882759 | 1.81848354 | Sphaerochaetaceae bacterium | 2791017 | Bacteria | Bacteria | 42.4 | 0.00529 | NR | MFA7019191.1 | 2791017 | g1661333 | i0 | 90.5 | 0.305825242718447 | 21 | 2 | 30.6 | 0 | 83 | 21 | 1 | 21 | MFA7019191.1 hypothetical protein [Sphaerochaetaceae bacterium] | diamond | 63 | 42.4 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Sphaerochaetaceae | Sphaerochaetaceae bacterium | |||
| 32052302 | 32052302 | PRJNA493244_P_NODE_1560618_length_229_cov_1.523810_g1537493_i0 | PRJNA493244 | 1560618 | 229 | 1.52381 | 3.4895249 | Treponema | 157 | Bacteria | Bacteria | 138 | 4.9099999999999995e-37 | NR | WP_255812155.1 | 158 | g1537493 | i0 | 81.6 | 4.97816593886463 | 76 | 14 | 99.6 | 0 | 228 | 1 | 123 | 198 | WP_255812155.1 transglycosylase SLT domain-containing protein [Treponema denticola] | diamond | 1140 | 138 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema denticola | ||
| 32321448 | 32321448 | PRJNA493244_P_NODE_928739_length_439_cov_13.714286_g905744_i0 | PRJNA493244 | 928739 | 439 | 13.714286 | 60.20571554 | Sphaerochaetaceae bacterium | 2791017 | Bacteria | Bacteria | 171 | 7.38e-50 | NR | MFA6935579.1 | 2791017 | g905744 | i0 | 97.6 | 0.567198177676538 | 83 | 2 | 56.7 | 0 | 19 | 267 | 223 | 305 | MFA6935579.1 hypothetical protein [Sphaerochaetaceae bacterium] | diamond | 249 | 171 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Sphaerochaetaceae | Sphaerochaetaceae bacterium | |||
| 32384399 | 32384399 | PRJNA493244_P_NODE_1707199_length_203_cov_0.901408_g1684074_i0 | PRJNA493244 | 1707199 | 203 | 0.901408 | 1.82985824 | Sphaerochaetaceae bacterium | 2791017 | Bacteria | Bacteria | 45.8 | 0.00176 | NR | MDY3769163.1 | 2791017 | g1684074 | i0 | 45.2 | 0.620689655172414 | 42 | 23 | 62.1 | 0 | 60 | 185 | 267 | 308 | MDY3769163.1 restriction endonuclease subunit S [Sphaerochaetaceae bacterium] | diamond | 126 | 45.8 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Sphaerochaetaceae | Sphaerochaetaceae bacterium | |||
| 32605673 | 32605673 | PRJNA493244_P_NODE_1733360_length_196_cov_3.651852_g1710235_i0 | PRJNA493244 | 1733360 | 196 | 3.651852 | 7.15762992 | Spirochaetota bacterium | 2202144 | Bacteria | Bacteria | 47.4 | 4.47e-4 | NR | HPS56622.1 | 2202144 | g1710235 | i0 | 55.3 | 4.82142857142857 | 38 | 17 | 58.2 | 0 | 30 | 143 | 364 | 401 | HPS56622.1 M14 family carboxypeptidase N/E [Spirochaetota bacterium] | diamond | 945 | 47.4 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetota bacterium | ||||||
| 32888924 | 32888924 | PRJNA493244_P_NODE_383680_length_858_cov_2.992472_g365879_i0 | PRJNA493244 | 383680 | 858 | 2.992472 | 25.67540976 | Treponema pedis | 409322 | Bacteria | Bacteria | 185 | 3.4599999999999996e-54 | NR | WP_020964460.1 | 409322 | g365879 | i0 | 53 | 2.13286713286713 | 202 | 83 | 67.5 | 5 | 853 | 275 | 7 | 205 | WP_020964460.1 ribosome biogenesis GTP-binding protein YihA/YsxC [Treponema pedis] | diamond | 1830 | 185 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema pedis |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;