RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA493244" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 3 ✖

bioproject 1

  • PRJNA493244 · 3 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27202659 27202659 PRJNA493244_P_NODE_1307102_length_295_cov_1.042735_g1283978_i0 PRJNA493244 1307102 295 1.042735 3.07606825 Deltaproteobacteria bacterium 13_1_4 2026735 Bacteria Bacteria 80.9 4.07e-17   NR OLC79295.1 1805121 g1283978 i0 82.8 1.29152542372881 64 10 64.1 1 105 293 1 64 OLC79295.1 MAG: 50S ribosomal protein L7/L12 [Deltaproteobacteria bacterium 13_1_40CM_4_68_19] diamond 381 80.9 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium 13_1_40CM_4_68_19
29571043 29571043 PRJNA493244_P_NODE_293930_length_989_cov_10.890086_g278691_i0 PRJNA493244 293930 989 10.890086 107.70295054 Lujinxingiaceae bacterium 2946527 Bacteria Bacteria 99.4 9.22e-19   NR MBA2663285.1 2946527 g278691 i0 33.7 0.746208291203236 246 138 69.5 9 737 51 104 341 MBA2663285.1 hypothetical protein [Lujinxingiaceae bacterium] diamond 738 99.4 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Lujinxingiaceae   Lujinxingiaceae bacterium
30329741 30329741 PRJNA493244_P_NODE_1509752_length_241_cov_0.994444_g1486627_i0 PRJNA493244 1509752 241 0.994444 2.39661004 Deltaproteobacteria bacterium 13_1_4 2026735 Bacteria Bacteria 60.1 2.81e-9   NR OLC79295.1 1805121 g1486627 i0 93.5 0.771784232365145 31 2 38.6 0 3 95 99 129 OLC79295.1 MAG: 50S ribosomal protein L7/L12 [Deltaproteobacteria bacterium 13_1_40CM_4_68_19] diamond 186 60.1 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium 13_1_40CM_4_68_19

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;