RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA493244", tax_clade = "Sar" and tax_phylum = "Foraminifera"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA493244 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4928174 4928174 PRJNA493244_P_NODE_405164_length_831_cov_2.851948_g386861_i0 PRJNA493244 405164 831 2.851948 23.69968788 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 308 2.7e-103   NR ETO03070.1 46433 g386861 i0 82.4 0.675090252707581 187 32 67.5 1 783 223 1 186 ETO03070.1 hypothetical protein RFI_34341 [Reticulomyxa filosa] diamond 561 308 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
6832323 6832323 PRJNA493244_P_NODE_1001886_length_406_cov_2.263768_g978796_i0 PRJNA493244 1001886 406 2.263768 9.19089808 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 427 5.539999999999998e-115   NTclustered gi|4850234|emb|AJ132367.1| 46433 g978796 i0 88.43 73.6256157635468 363 31 87 8 10 364 2196 2555 Reticulomyxa filosa SSU rRNA gene, isolate 613 blastn 29892 427 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
27377209 27377209 PRJNA493244_P_NODE_205343_length_1169_cov_4.789711_g193411_i0 PRJNA493244 205343 1169 4.789711 55.99172159 Parmales 722750 SAR_Eukaryotes SAR_Eukaryotes 88.6 1.37e-15   NR ETO08814.1 46433 g193411 i0 28 2.54576561163387 261 131 64.4 8 13 765 89 302 ETO08814.1 EH domain-containing protein 4, partial [Reticulomyxa filosa] diamond 2976 88.6 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;