RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA493244", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 4 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA493244 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13210073 13210073 PRJNA493244_P_NODE_1693511_length_204_cov_2.993007_g1670386_i0 PRJNA493244 1693511 204 2.993007 6.10573428 Rubrivirga sp. IMCC45206 3391614 Bacteria Bacteria 163 7.88e-36   NTclustered gi|2890849321|gb|CP177357.1| 3391614 g1670386 i0 84.024 10.1372549019608 169 27 83 0 23 191 3325929 3325761 Rubrivirga sp. IMCC45206 chromosome, complete genome blastn 2068 163 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC45206
20856655 20856655 PRJNA493244_P_NODE_1146897_length_348_cov_1.052265_g1123774_i0 PRJNA493244 1146897 348 1.052265 3.6618822 Rubrivirga sp. IMCC45206 3391614 Bacteria Bacteria 311 4.93e-80   NTclustered gi|2890849321|gb|CP177357.1| 3391614 g1123774 i0 82.808 2.00574712643678 349 58 100 2 1 348 2882983 2883330 Rubrivirga sp. IMCC45206 chromosome, complete genome blastn 698 311 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC45206
28260820 28260820 PRJNA493244_P_NODE_1494126_length_244_cov_2.071038_g1471001_i0 PRJNA493244 1494126 244 2.071038 5.05333272 Rubrivirga 1434037 Bacteria Bacteria 45.4 0.00411   NR WP_095508752.1 1196024 g1471001 i0 69.7 1.27868852459016 33 10 40.6 0 128 226 1 33 WP_095508752.1 esterase/lipase family protein [Rubrivirga marina] diamond 312 45.8 0.991266375545852 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga marina
29350201 29350201 PRJNA493244_P_NODE_1716049_length_202_cov_0.907801_g1692924_i0 PRJNA493244 1716049 202 0.907801 1.83375802 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 89.4 7.96e-19   NR HEX8387152.1 2838334 g1692924 i0 63.6 0.98019801980198 66 24 98 0 200 3 496 561 HEX8387152.1 BamA/TamA family outer membrane protein [Rubricoccaceae bacterium] diamond 198 89.4 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;