RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA493244", tax_clade = "Apusozoa" and tax_superkingdom = "Eukaryota"

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analysis 2

tax_superkingdom 1

  • Eukaryota · 2 ✖

tax_clade 1

  • Apusozoa · 2 ✖

bioproject 1

  • PRJNA493244 · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3651311 3651311 PRJNA493244_P_NODE_839123_length_485_cov_2.924528_g816319_i0 PRJNA493244 839123 485 2.924528 14.1839608 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 88.2 4.07e-17   NR XP_013755835.1 461836 g816319 i0 34.7 0.909278350515464 147 89 90.9 2 29 469 5 144 XP_013755835.1 uncharacterized protein AMSG_07772 [Thecamonas trahens ATCC 50062] diamond 441 88.2 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
9384875 9384875 PRJNA493244_P_NODE_384168_length_857_cov_4.856784_g366348_i0 PRJNA493244 384168 857 4.856784 41.62263888 Multimonas media 1314683 Root_unresolved Root_unresolved 176 4.91e-39   NTclustered gi|2206682170|gb|OM966643.1| 1314683 g366348 i0 81.092 26.0233372228705 238 30 27 9 623 857 6083 6308 Multimonas media strain MMROSKO2018 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 22302 176 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Multimonas Multimonas media

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;