RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA492406", tax_phylum = "Spirochaetota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 8 ✖

tax_phylum 1

  • Spirochaetota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJNA492406 · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15127172 15127172 PRJNA492406_P_NODE_10252_length_385_cov_1.480769_g9953_i0 PRJNA492406 10252 385 1.480769 5.70096065 Leptospira 171 Bacteria Bacteria 706 0   NTclustered gi|1275363544|gb|MF380463.1| 178 g9953 i0 99.74 100.963636363636 385 1 100 0 1 385 400 16 Leptospira sp. strain WFW58 16S ribosomal RNA gene, partial sequence blastn 38871 712 0.991573033707865 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Leptospira Leptospira sp.
22128715 22128715 PRJNA492406_P_NODE_15378_length_320_cov_1.085020_g15079_i0 PRJNA492406 15378 320 1.08502 3.472064 Spirochaetota bacterium 2202144 Bacteria Bacteria 222 2.16e-53   NTclustered gi|2621703426|emb|OY760686.1| 2202144 g15079 i0 79.63 173.8375 324 54 99 11 1 318 1823 2140 MAG: Spirochaetota bacterium isolate b615e79e-4617-45ea-95f9-f7a736470f88 genome assembly, chromosome: 1 blastn 55628 222 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
24678527 24678527 PRJNA492406_P_NODE_23320_length_267_cov_1.237113_g23021_i0 PRJNA492406 23320 267 1.237113 3.30309171 Leptospira cinconiae 3235173 Bacteria Bacteria 472 1.5799999999999998e-128   NTclustered gi|2777192084|gb|CP162137.1| 3235173 g23021 i0 98.502 181.138576779026 267 4 100 0 1 267 754576 754842 Leptospira cinconiae strain WS58.C1 chromosome 1, complete sequence blastn 48364 472 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Leptospira Leptospira cinconiae
26664640 26664640 PRJNA492406_P_NODE_5021_length_535_cov_1.471861_g4726_i0 PRJNA492406 5021 535 1.471861 7.87445635 Leptospiraceae bacterium 2026757 Bacteria Bacteria 80.1 4.83e-14   NR MCB1188831.1 2026757 g4726 i0 40.3 4.30654205607477 124 71 69.5 2 377 6 188 308 MCB1188831.1 hypothetical protein [Leptospiraceae bacterium] diamond 2304 80.1 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae   Leptospiraceae bacterium
27518795 27518795 PRJNA492406_P_NODE_16403_length_309_cov_1.728814_g16104_i0 PRJNA492406 16403 309 1.728814 5.34203526 Spirochaetes bacterium GWB1_59_5 1802176 Bacteria Bacteria 50.4 8.79e-5   NR OHD18884.1 1802176 g16104 i0 38.7 1.02912621359223 106 55 93.2 2 296 9 14 119 OHD18884.1 MAG: hypothetical protein A2Y38_14560 [Spirochaetes bacterium GWB1_59_5] diamond 318 50.4 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetes bacterium GWB1_59_5
29286817 29286817 PRJNA492406_P_NODE_31549_length_242_cov_0.911243_g31250_i0 PRJNA492406 31549 242 0.911243 2.20520806 Spirochaetaceae bacterium 4572_59 1971727 Bacteria Bacteria 50.1 8.6e-5   NR OQY32698.1 1971727 g31250 i0 37 1.00413223140496 81 45 96.7 2 240 7 95 172 OQY32698.1 MAG: hypothetical protein B6241_10220 [Spirochaetaceae bacterium 4572_59] diamond 243 50.1 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Spirochaetaceae   Spirochaetaceae bacterium 4572_59
30123820 30123820 PRJNA492406_P_NODE_22772_length_270_cov_1.086294_g22473_i0 PRJNA492406 22772 270 1.086294 2.9329938 root 1 Root_unresolved Root_unresolved 76.6 1.45e-14   NR MBQ9205232.1 166 g22473 i0 48.1 5.26666666666667 77 39 85.6 1 270 40 169 244 MBQ9205232.1 CAP domain-containing protein [Treponema sp.] diamond 1422 76.6 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp.
31609469 31609469 PRJNA492406_P_NODE_20536_length_281_cov_1.278846_g20237_i0 PRJNA492406 20536 281 1.278846 3.59355726 root 1 Root_unresolved Root_unresolved 116 1.59e-29   NR MBR2282634.1 2026792 g20237 i0 54.8 4.93238434163701 93 42 99.3 0 2 280 63 155 MBR2282634.1 methionine--tRNA ligase [Spirochaetales bacterium] diamond 1386 117 0.991452991452991 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales     Spirochaetales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;