RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA492406" and tax_phylum = "Perkinsozoa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Perkinsozoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA492406 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25325438 25325438 PRJNA492406_P_NODE_23580_length_265_cov_5.854167_g23281_i0 PRJNA492406 23580 265 5.854167 15.51354255 Perkinsus 28000 SAR_Eukaryotes SAR_Eukaryotes 113 1.1e-20   NTclustered gi|22417090|gb|AF509333.1| 32597 g23281 i0 89.13 9.43018867924528 92 9 34 1 167 257 7070 6979 Perkinsus atlanticus 5S ribosomal RNA, small subunit ribosomal RNA genes, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence blastn 2499 113 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni
27661222 27661222 PRJNA492406_P_NODE_31844_length_241_cov_1.375000_g31545_i0 PRJNA492406 31844 241 1.375 3.31375 Perkinsus 28000 SAR_Eukaryotes SAR_Eukaryotes 99 6.2e-22   NR KAF4656514.1 330153 g31545 i0 62 6.88381742738589 79 29 97.1 1 7 240 3308 3386 KAF4656514.1 Dynein heavy chain 1, axonemal [Perkinsus chesapeaki] diamond 1659 99 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus chesapeaki
29839667 29839667 PRJNA492406_P_NODE_32771_length_229_cov_2.044872_g32472_i0 PRJNA492406 32771 229 2.044872 4.68275688 Perkinsus 28000 SAR_Eukaryotes SAR_Eukaryotes 112 1.27e-26   NR KAF4747297.1 32597 g32472 i0 76 5.90829694323144 75 18 98.3 0 1 225 239 313 KAF4747297.1 Sodium/potassium-transporting ATPase subunit alpha-1, partial [Perkinsus olseni] diamond 1353 112 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni
30060646 30060646 PRJNA492406_P_NODE_27471_length_249_cov_1.676136_g27172_i0 PRJNA492406 27471 249 1.676136 4.17357864 Perkinsus 28000 SAR_Eukaryotes SAR_Eukaryotes 54.7 2.48e-6   NR KAF4671986.1 32597 g27172 i0 62.9 2.10843373493976 35 13 42.2 0 235 131 67 101 KAF4671986.1 hypothetical protein FOL46_009662 [Perkinsus olseni] diamond 525 54.7 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;