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contig_metadata

28 rows where bioproject = "PRJNA492406" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 28 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA492406 · 28 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
452471 452471 PRJNA492406_P_NODE_19121_length_287_cov_2.261682_g18822_i0 PRJNA492406 19121 287 2.261682 6.49102734 Caenorhabditis elegans 6239 Nematoda Nematoda 525 1.2999999999999995e-144   NTclustered gi|687867634|emb|LK929784.1| 6239 g18822 i0 99.652 6.07317073170732 287 1 100 0 1 287 1408 1694 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_contig0001286 blastn 1743 525 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
6829928 6829928 PRJNA492406_P_NODE_17606_length_297_cov_3.482143_g17307_i0 PRJNA492406 17606 297 3.482143 10.34196471 Pristionchus maxplancki 1317128 Nematoda Nematoda 167 9.44e-37   NTclustered gi|478487019|gb|KC491689.1| 1317128 g17307 i0 77.7 61.016835016835 287 52 94 7 20 297 317 34 Pristionchus maxplancki strain RS5594 large subunit ribosomal protein 27a (rpl27a) gene, partial cds blastn 18122 167 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus maxplancki
6830138 6830138 PRJNA492406_P_NODE_26846_length_251_cov_0.865169_g26547_i0 PRJNA492406 26846 251 0.865169 2.17157419 Caenorhabditis elegans 6239 Nematoda Nematoda 459 1.1499999999999996e-124   NTclustered gi|413004756|emb|Z81495.2| 6239 g26547 i0 99.602 92.9601593625498 251 1 100 0 1 251 1298 1548 Caenorhabditis elegans Cosmid F08G2, complete sequence blastn 23333 459 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
9380394 9380394 PRJNA492406_P_NODE_25088_length_258_cov_1.443243_g24789_i0 PRJNA492406 25088 258 1.443243 3.72356694 Caenorhabditis elegans 6239 Nematoda Nematoda 477 3.2699999999999985e-130   NTclustered gi|6919|emb|X03044.1| 6239 g24789 i0 100 10.9457364341085 258 0 100 0 1 258 1838 2095 Caenorhabditis elegans vit-5 gene for vitellogenin blastn 2824 477 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
10655932 10655932 PRJNA492406_P_NODE_11709_length_363_cov_2.789655_g11410_i0 PRJNA492406 11709 363 2.789655 10.12644765 Pristionchus pauli 376545 Nematoda Nematoda 268 3.1399999999999996e-67   NTclustered gi|150982019|gb|EF634598.1| 376545 g11410 i0 81.571 7.23415977961433 331 55 90 6 1 328 364 37 Pristionchus pauli large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 2626 268 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pauli
11931014 11931014 PRJNA492406_P_NODE_19110_length_287_cov_3.154206_g18811_i0 PRJNA492406 19110 287 3.154206 9.05257122 Caenorhabditis elegans 6239 Nematoda Nematoda 531 2.799999999999999e-146   NTclustered gi|1279388950|gb|MG551689.1| 6239 g18811 i0 100 98.595818815331 287 0 100 0 1 287 319 33 Caenorhabditis elegans isolate C.eleg_AM151 small subunit ribosomal RNA gene, partial sequence blastn 28297 531 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
11931055 11931055 PRJNA492406_P_NODE_20790_length_279_cov_2.766990_g20491_i0 PRJNA492406 20790 279 2.76699 7.7199021 Caenorhabditis elegans 6239 Nematoda Nematoda 505 1.6399999999999995e-138   NTclustered gi|28396069|gb|AY204194.1| 6239 g20491 i0 99.283 98.5878136200717 279 2 100 0 1 279 922 644 Caenorhabditis elegans clone yk805b2 nuclear receptor (NHR-108) pseudogene mRNA, complete sequence blastn 27506 505 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
11931177 11931177 PRJNA492406_P_NODE_26610_length_251_cov_0.865169_g26311_i0 PRJNA492406 26610 251 0.865169 2.17157419 Caenorhabditis elegans 6239 Nematoda Nematoda 464 2.47e-126   NTclustered gi|1972231355|ref|NM_059927.7| 6239 g26311 i0 100 3.0199203187251 251 0 100 0 1 251 660 910 Caenorhabditis elegans DFDF domain-containing protein (edc-3), mRNA blastn 758 464 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
16401827 16401827 PRJNA492406_P_NODE_22973_length_268_cov_4.230769_g22674_i0 PRJNA492406 22973 268 4.230769 11.33846092 Caenorhabditis 6237 Nematoda Nematoda 496 9.429999999999999e-136   NTclustered gi|1279388950|gb|MG551689.1| 6239 g22674 i0 100 101 268 0 100 0 1 268 542 809 Caenorhabditis elegans isolate C.eleg_AM151 small subunit ribosomal RNA gene, partial sequence blastn 27068 496 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
18304217 18304217 PRJNA492406_P_NODE_27655_length_249_cov_0.875000_g27356_i0 PRJNA492406 27655 249 0.875 2.17875 Strongyloides papillosus 174720 Nematoda Nematoda 222 1.62e-53   NTclustered gi|687022644|emb|LM525558.1| 174720 g27356 i0 82.869 43.6305220883534 251 39 100 4 1 249 232324 232572 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000004 blastn 10864 222 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
20854352 20854352 PRJNA492406_P_NODE_32977_length_200_cov_5.031496_g32678_i0 PRJNA492406 32977 200 5.031496 10.062992 Caenorhabditis elegans 6239 Nematoda Nematoda 370 4.22e-98   NTclustered gi|413006566|emb|Z92784.2| 6239 g32678 i0 100 36.885 200 0 100 0 1 200 28609 28808 Caenorhabditis elegans Cosmid F31C3, complete sequence blastn 7377 370 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
22129261 22129261 PRJNA492406_P_NODE_9158_length_404_cov_10.770393_g8859_i0 PRJNA492406 9158 404 10.770393 43.51238772 Caenorhabditis elegans 6239 Nematoda Nematoda 736 0   NTclustered gi|413006566|emb|Z92784.2| 6239 g8859 i0 100 98.7821782178218 398 0 99 0 1 398 28117 28514 Caenorhabditis elegans Cosmid F31C3, complete sequence blastn 39908 736 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
24678391 24678391 PRJNA492406_P_NODE_17360_length_299_cov_3.185841_g17061_i0 PRJNA492406 17360 299 3.185841 9.52566459 Rhabditoides inermis 96661 Nematoda Nematoda 88.6 2.85e-20   NR ACV21053.1 96661 g17061 i0 59.8 3.5819397993311 87 35 87.3 0 262 2 1 87 ACV21053.1 large subunit ribosomal protein 35, partial [Rhabditoides inermis] diamond 1071 88.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Rhabditoides Rhabditoides inermis
24678644 24678644 PRJNA492406_P_NODE_28680_length_247_cov_0.885057_g28381_i0 PRJNA492406 28680 247 0.885057 2.18609079 Caenorhabditis elegans 6239 Nematoda Nematoda 451 1.88e-122   NTclustered gi|1972262238|ref|NM_065355.6| 6239 g28381 i0 99.595 3.0080971659919 247 1 100 0 1 247 1303 1549 Caenorhabditis elegans Cell division control protein 45 homolog (evl-18), partial mRNA blastn 743 451 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
25325403 25325403 PRJNA492406_P_NODE_18000_length_293_cov_8.913636_g17701_i0 PRJNA492406 18000 293 8.913636 26.11695348 Caenorhabditis 6237 Nematoda Nematoda 540 4.76e-149   NTclustered gi|256561710|gb|FJ589010.1| 6239 g17701 i0 100 71.3447098976109 292 0 99 0 1 292 18 309 Caenorhabditis elegans isolate X5005 large subunit ribosomal RNA gene, partial sequence blastn 20904 540 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
27503381 27503381 PRJNA492406_P_NODE_31043_length_243_cov_0.905882_g30744_i0 PRJNA492406 31043 243 0.905882 2.20129326 Opisthokonta 33154 Nematoda Nematoda 47 0.00113   NR KAF8372464.1 54126 g30744 i0 37.8 5.59259259259259 74 36 91.4 2 225 4 77 140 KAF8372464.1 sqd-1 [Pristionchus pacificus] diamond 1359 47.4 0.991561181434599 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pacificus
27534797 27534797 PRJNA492406_P_NODE_18863_length_288_cov_2.553488_g18564_i0 PRJNA492406 18863 288 2.553488 7.35404544 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 123 5.06e-34   NR KAF8363112.1 54126 g18564 i0 65.6 5.36458333333333 90 30 93.8 1 19 288 19 107 KAF8363112.1 hypothetical protein PRIPAC_90035 [Pristionchus pacificus] diamond 1545 123 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pacificus
27566197 27566197 PRJNA492406_P_NODE_22104_length_273_cov_1.380000_g21805_i0 PRJNA492406 22104 273 1.38 3.7674 Onchocercidae 6296 Nematoda Nematoda 94.4 3.74e-20   NR MCP9265862.1 6287 g21805 i0 54.9 4.89010989010989 91 40 98.9 1 272 3 441 531 MCP9265862.1 Thioredoxin reductase 1, cytoplasmic [Dirofilaria immitis] diamond 1335 94.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Dirofilaria Dirofilaria immitis
28276434 28276434 PRJNA492406_P_NODE_3486_length_643_cov_1.021053_g3196_i0 PRJNA492406 3486 643 1.021053 6.56537079 Aphelenchoides besseyi 269767 Nematoda Nematoda 50.8 0.00168   NR KAI6202865.1 269767 g3196 i0 28.5 1.21306376360809 130 85 58.8 4 468 91 58 183 KAI6202865.1 Protein disulfide-isomerase [Aphelenchoides besseyi] diamond 780 50.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides besseyi
28797516 28797516 PRJNA492406_P_NODE_26007_length_253_cov_2.061111_g25708_i0 PRJNA492406 26007 253 2.061111 5.21461083 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 114 9.65e-28   NR NP_498326.1 6239 g25708 i0 65.9 18.5691699604743 82 28 97.2 0 8 253 132 213 NP_498326.1 putative glycylpeptide N-tetradecanoyltransferase [Caenorhabditis elegans] diamond 4698 115 0.991304347826087 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
28923885 28923885 PRJNA492406_P_NODE_27228_length_250_cov_0.870056_g26929_i0 PRJNA492406 27228 250 0.870056 2.17514 Rhabditida 6236 Nematoda Nematoda 66.6 9.85e-11   NR KHN72989.1 6265 g26929 i0 61.4 3.576 44 17 52.8 0 231 100 34 77 KHN72989.1 Serine/arginine-rich splicing factor 4 [Toxocara canis] diamond 894 66.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
29366126 29366126 PRJNA492406_P_NODE_12749_length_350_cov_1.985560_g12450_i0 PRJNA492406 12749 350 1.98556 6.94946 Angiostrongylus 6312 Nematoda Nematoda 99.8 5.090000000000001e-22   NR ADQ57303.1 6313 g12450 i0 43.2 2.02285714285714 118 63 98.6 3 348 4 62 178 ADQ57303.1 cathepsin B-like cysteine proteinase 1 [Angiostrongylus cantonensis] diamond 708 100 0.998 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Metastrongylidae Angiostrongylus Angiostrongylus cantonensis
29428990 29428990 PRJNA492406_P_NODE_12549_length_352_cov_2.304659_g12250_i0 PRJNA492406 12549 352 2.304659 8.11239968 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 95.9 5.9e-21   NR KAL3073343.1 157864 g12250 i0 42.2 6.83522727272727 116 67 98.9 0 348 1 143 258 KAL3073343.1 hypothetical protein niasHT_038700 [Heterodera trifolii] diamond 2406 95.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Heterodera Heterodera trifolii
29855343 29855343 PRJNA492406_P_NODE_26191_length_252_cov_1.944134_g25892_i0 PRJNA492406 26191 252 1.944134 4.89921768 Meloidogyne graminicola 189291 Nematoda Nematoda 91.7 1.03e-19   NR KAF7638142.1 189291 g25892 i0 68.9 2.17857142857143 61 19 72.6 0 250 68 297 357 KAF7638142.1 Pyruvate dehydrogenase E1 component subunit beta [Meloidogyne graminicola] diamond 549 91.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne graminicola
30202552 30202552 PRJNA492406_P_NODE_27472_length_249_cov_1.670455_g27173_i0 PRJNA492406 27472 249 1.670455 4.15943295 Pristionchus mayeri 1317129 Nematoda Nematoda 44.3 0.0106   NR GMR48503.1 1317129 g27173 i0 49.1 0.662650602409639 55 26 63.9 1 160 2 47 101 GMR48503.1 hypothetical protein PMAYCL1PPCAC_18698, partial [Pristionchus mayeri] diamond 165 44.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus mayeri
30977229 30977229 PRJNA492406_P_NODE_16374_length_309_cov_3.372881_g16075_i0 PRJNA492406 16374 309 3.372881 10.42220229 Opisthokonta 33154 Nematoda Nematoda 120 2.44e-30   NR KAI6203170.1 269767 g16075 i0 59.6 23.0679611650485 99 39 96.1 1 305 9 3 100 KAI6203170.1 Ribos-L4-asso-C domain-containing protein [Aphelenchoides besseyi] diamond 7128 121 0.991735537190083 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides besseyi
31593613 31593613 PRJNA492406_P_NODE_18976_length_288_cov_1.344186_g18677_i0 PRJNA492406 18976 288 1.344186 3.87125568 Necator americanus 51031 Nematoda Nematoda 44.3 0.0176   NR XP_064068295.1 51031 g18677 i0 37.5 1.33333333333333 64 36 66.7 1 205 14 360 419 XP_064068295.1 hypothetical protein RB195_024584 [Necator americanus] diamond 384 44.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus
31862256 31862256 PRJNA492406_P_NODE_7657_length_438_cov_1.679452_g7358_i0 PRJNA492406 7657 438 1.679452 7.3559997600000004 Trichinella 6333 Nematoda Nematoda 123 1.88e-29   NR KRY45026.1 45882 g7358 i0 39.6 10.7465753424658 144 87 98.6 0 6 437 1040 1183 KRY45026.1 Transposon Ty3-I Gag-Pol polyprotein [Trichinella britovi] diamond 4707 124 0.991935483870968 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella britovi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;