RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA492406", tax_phylum = "Methanobacteriota" and tax_superkingdom = "Archaea"

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analysis 2

tax_superkingdom 1

  • Archaea · 5 ✖

tax_phylum 1

  • Methanobacteriota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA492406 · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4279350 4279350 PRJNA492406_P_NODE_1424_length_1014_cov_5.552604_g1204_i0 PRJNA492406 1424 1014 5.552604 56.30340456 Halospeciosus flavus 3032283 Archaea Archaea 56.5 0.008   NTclustered gi|2490484842|gb|CP122312.1| 3032283 g1204 i0 100 0.0887573964497041 30 0 3 0 951 980 134184 134213 Halospeciosus flavus strain XZGYJ-43 chromosome blastn 90 56.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halospeciosus Halospeciosus flavus
19578210 19578210 PRJNA492406_P_NODE_1756_length_919_cov_403.706856_g1509_i0 PRJNA492406 1756 919 403.706856 3710.06600664 uncultured Methanoregula sp. 1005933 Archaea Archaea 1602 0   NTclustered gi|2621785414|emb|OY781872.1| 1005933 g1509 i0 98.148 295.692056583243 918 17 99 0 1 918 3117956 3117039 MAG: uncultured Methanoregula sp. isolate a338d9b7-13de-4e9d-8f1a-cfe667c23436 genome assembly, chromosome: 1 blastn 271741 1602 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula uncultured Methanoregula sp.
26791684 26791684 PRJNA492406_P_NODE_25841_length_254_cov_1.674033_g25542_i0 PRJNA492406 25841 254 1.674033 4.25204382 Candidatus Methanoperedens sp. 2032688 Archaea Archaea 54.7 2.36e-6   NR NJD76986.1 2032688 g25542 i0 70.6 0.803149606299213 34 10 40.2 0 252 151 100 133 NJD76986.1 hypothetical protein [Candidatus Methanoperedens sp.] diamond 204 54.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Candidatus Methanoperedentaceae Candidatus Methanoperedens Candidatus Methanoperedens sp.
28892252 28892252 PRJNA492406_P_NODE_30968_length_243_cov_0.905882_g30669_i0 PRJNA492406 30968 243 0.905882 2.20129326 Archaea 2157 Archaea Archaea 43.1 0.0117   NR MDD1638922.1 2184052 g30669 i0 40.6 1.58024691358025 64 31 71.6 2 3 176 63 125 MDD1638922.1 hypothetical protein [Methanomicrobiales archaeon] diamond 384 43.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales     Methanomicrobiales archaeon
29981650 29981650 PRJNA492406_P_NODE_24911_length_259_cov_1.430108_g24612_i0 PRJNA492406 24911 259 1.430108 3.70397972 Methanobacteriota archaeon 2026739 Archaea Archaea 43.1 0.0324   NR MAK84661.1 2026739 g24612 i0 40 0.694980694980695 60 30 69.5 1 180 1 41 94 MAK84661.1 hypothetical protein [Methanobacteriota archaeon] diamond 180 43.1 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;