RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA492406" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA492406 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27187073 27187073 PRJNA492406_P_NODE_6022_length_488_cov_3.187952_g5723_i0 PRJNA492406 6022 488 3.187952 15.55720576 PVC group 1783257 Bacteria Bacteria 65.9 1.18e-9   NR NMA20665.1 1932692 g5723 i0 47.8 4.29713114754098 67 31 38.7 1 299 487 114 180 NMA20665.1 OmpA family protein [Lentisphaerota bacterium] diamond 2097 66.2 0.995468277945619 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
28355600 28355600 PRJNA492406_P_NODE_14506_length_329_cov_1.542969_g14207_i0 PRJNA492406 14506 329 1.542969 5.07636801 Pseudomonadati 3379134 Bacteria Bacteria 127 2.73e-33   NR OGV51411.1 1798571 g14207 i0 66.7 3.00911854103343 81 27 73.9 0 325 83 221 301 OGV51411.1 MAG: methyltransferase [Lentisphaerae bacterium GWF2_44_16] diamond 990 128 0.9921875 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerae bacterium GWF2_44_16

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;