RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

14 rows where bioproject = "PRJNA492406" and tax_kingdom = "Pararnavirae"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 14 ✖

bioproject 1

  • PRJNA492406 · 14 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3002986 3002986 PRJNA492406_P_NODE_13423_length_342_cov_1.144981_g13124_i0 PRJNA492406 13423 342 1.144981 3.91583502 Betaretrovirus squmon 3427297 Viruses Viruses 610 4.25e-170   NTclustered gi|1666023499|gb|MK561030.1| 11856 g13124 i0 98.83 3.83625730994152 342 4 100 0 1 342 3600 3259 Squirrel monkey retrovirus, complete genome blastn 1312 610 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon
3003360 3003360 PRJNA492406_P_NODE_3103_length_684_cov_1.700491_g2814_i0 PRJNA492406 3103 684 1.700491 11.63135844 Betaretrovirus squmon 3427297 Viruses Viruses 1206 0   NTclustered gi|1666023499|gb|MK561030.1| 11856 g2814 i0 98.536 3.99415204678363 683 10 99 0 2 684 7153 6471 Squirrel monkey retrovirus, complete genome blastn 2732 1206 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon
4927392 4927392 PRJNA492406_P_NODE_24244_length_262_cov_1.597884_g23945_i0 PRJNA492406 24244 262 1.597884 4.18645608 root 1 Root_unresolved Root_unresolved 468 1.9999999999999996e-127   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g23945 i0 98.855 46.9083969465649 262 3 100 0 1 262 2235 1974 Moloney murine leukemia virus, complete genome blastn 12290 468 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
6830404 6830404 PRJNA492406_P_NODE_8686_length_414_cov_2.258065_g8387_i0 PRJNA492406 8686 414 2.258065 9.3483891 Betaretrovirus squmon 3427297 Viruses Viruses 737 0   NTclustered gi|1666023499|gb|MK561030.1| 11856 g8387 i0 99.027 4.95410628019324 411 4 99 0 4 414 7946 7536 Squirrel monkey retrovirus, complete genome blastn 2051 737 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon
10027572 10027572 PRJNA492406_P_NODE_3108_length_683_cov_2.204918_g2819_i0 PRJNA492406 3108 683 2.204918 15.05958994 root 1 Root_unresolved Root_unresolved 1256 0   NTclustered gi|2088546|gb|U87552.1|MLU87552 11786 g2819 i0 99.854 90.4802342606149 683 1 100 0 1 683 740 58 Murine leukemia virus integrase (pol) gene, partial cds blastn 61798 1256 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
12578198 12578198 PRJNA492406_P_NODE_2730_length_726_cov_1.606432_g2447_i0 PRJNA492406 2730 726 1.606432 11.66269632 root 1 Root_unresolved Root_unresolved 1341 0   NTclustered gi|1431162561|gb|EU075330.2| 11786 g2447 i0 100 96.435261707989 726 0 100 0 1 726 4583 3858 Mutant Murine leukemia virus clone 4-6w_c7 gag-pro-pol polyprotein gene, complete cds blastn 70012 1341 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
15127296 15127296 PRJNA492406_P_NODE_27372_length_250_cov_0.870056_g27073_i0 PRJNA492406 27372 250 0.870056 2.17514 root 1 Root_unresolved Root_unresolved 457 4.1099999999999985e-124   NTclustered gi|332027|gb|M33469.1|MLVENVC 11786 g27073 i0 99.6 8 250 1 100 0 1 250 1250 1001 4070A Amphotropic Murine leukemia virus envelope gene, complete cds blastn 2000 457 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
17676980 17676980 PRJNA492406_P_NODE_4914_length_540_cov_1.985011_g4619_i0 PRJNA492406 4914 540 1.985011 10.7190594 root 1 Root_unresolved Root_unresolved 992 0   NTclustered gi|1173658|gb|U36602.1|MLU36602 11786 g4619 i0 99.815 7.95555555555556 540 1 100 0 1 540 1298 759 Murine leukemia virus gPr80 envelope polyprotein precursor (env) mRNA, complete cds blastn 4296 992 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
19578729 19578729 PRJNA492406_P_NODE_9936_length_390_cov_1.940063_g9637_i0 PRJNA492406 9936 390 1.940063 7.5662457 Betaretrovirus squmon 3427297 Viruses Viruses 676 0   NTclustered gi|1666023499|gb|MK561030.1| 11856 g9637 i0 97.949 4.08717948717949 390 8 100 0 1 390 3625 4014 Squirrel monkey retrovirus, complete genome blastn 1594 676 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon
20854387 20854387 PRJNA492406_P_NODE_4497_length_563_cov_2.810204_g4202_i0 PRJNA492406 4497 563 2.810204 15.82144852 Betaretrovirus squmon 3427297 Viruses Viruses 1040 0   NTclustered gi|1666023499|gb|MK561030.1| 11856 g4202 i0 100 4.25399644760213 563 0 100 0 1 563 1740 2302 Squirrel monkey retrovirus, complete genome blastn 2395 1040 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon
22776362 22776362 PRJNA492406_P_NODE_3178_length_674_cov_1.888519_g2888_i0 PRJNA492406 3178 674 1.888519 12.72861806 root 1 Root_unresolved Root_unresolved 1240 0   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g2888 i0 99.852 99.433234421365 674 1 100 0 1 674 1907 1234 Moloney murine leukemia virus, complete genome blastn 67018 1240 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
22776378 22776378 PRJNA492406_P_NODE_4218_length_585_cov_1.404297_g3924_i0 PRJNA492406 4218 585 1.404297 8.21513745 Betaretrovirus 140052 Viruses Viruses 1053 0   NTclustered gi|1666023499|gb|MK561030.1| 11856 g3924 i0 99.145 3.53675213675214 585 5 100 0 1 585 2543 3127 Squirrel monkey retrovirus, complete genome blastn 2069 1053 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon
23405076 23405076 PRJNA492406_P_NODE_6659_length_467_cov_1.390863_g6360_i0 PRJNA492406 6659 467 1.390863 6.49533021 Betaretrovirus squmon 3427297 Viruses Viruses 835 0   NTclustered gi|1666023499|gb|MK561030.1| 11856 g6360 i0 98.929 8.24197002141328 467 5 100 0 1 467 8567 8101 Squirrel monkey retrovirus, complete genome blastn 3849 835 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon
24051103 24051103 PRJNA492406_P_NODE_19399_length_286_cov_1.582160_g19100_i0 PRJNA492406 19399 286 1.58216 4.5249776 Betaretrovirus 140052 Viruses Viruses 518 2.17e-142   NTclustered gi|9627014|ref|NC_001514.1| 11856 g19100 i0 99.301 3.72377622377622 286 2 100 0 1 286 4684 4399 Squirrel monkey retrovirus - HLB, complete genome blastn 1065 518 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;