RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA492406", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 8 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 8 ✖

bioproject 1

  • PRJNA492406 · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5556230 5556230 PRJNA492406_P_NODE_31825_length_241_cov_1.434524_g31526_i0 PRJNA492406 31825 241 1.434524 3.45720284 Longimicrobium sp. 2029185 Bacteria Bacteria 57.4 2.4e-7   NR HET7464282.1 2029185 g31526 i0 53.6 0.697095435684647 56 26 69.7 0 240 73 323 378 HET7464282.1 glycosyltransferase family 4 protein [Longimicrobium sp.] diamond 168 57.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
11931036 11931036 PRJNA492406_P_NODE_19970_length_284_cov_0.819905_g19671_i0 PRJNA492406 19970 284 0.819905 2.3285302 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 254 6.7e-63   NTclustered gi|2874253728|emb|OY969570.1| 412054 g19671 i0 89.899 78.1232394366197 198 18 69 2 83 279 2314431 2314627 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 22187 254 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
26791680 26791680 PRJNA492406_P_NODE_22121_length_273_cov_1.310000_g21822_i0 PRJNA492406 22121 273 1.31 3.5763 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 43.1 0.0375   NR MEO5904546.1 2026741 g21822 i0 47.5 0.43956043956044 40 21 44 0 2 121 297 336 MEO5904546.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 120 43.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
30739919 30739919 PRJNA492406_P_NODE_26874_length_250_cov_2.491525_g26575_i0 PRJNA492406 26874 250 2.491525 6.2288125 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 63.2 2.7e-9   NR MDE2781386.1 2026742 g26575 i0 45.7 1.98 81 43 97.2 1 5 247 1609 1688 MDE2781386.1 SwmB domain-containing protein [Gemmatimonadota bacterium] diamond 495 63.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
30803067 30803067 PRJNA492406_P_NODE_32954_length_208_cov_4.614815_g32655_i0 PRJNA492406 32954 208 4.614815 9.5988152 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 42 0.0432   NR HET9066663.1 2448054 g32655 i0 40.4 0.822115384615385 57 30 82.2 1 9 179 416 468 HET9066663.1 ABC transporter permease [Gemmatimonadales bacterium] diamond 171 42 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
31293047 31293047 PRJNA492406_P_NODE_5455_length_513_cov_1.590909_g5157_i0 PRJNA492406 5455 513 1.590909 8.16136317 Pseudomonadati 3379134 Bacteria Bacteria 112 4.76e-25   NR HKV50413.1 2026741 g5157 i0 32.8 8.7953216374269 189 101 98.2 5 511 8 525 708 HKV50413.1 S41 family peptidase [Gemmatimonadaceae bacterium] diamond 4512 112 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32052289 32052289 PRJNA492406_P_NODE_21178_length_278_cov_1.151220_g20879_i0 PRJNA492406 21178 278 1.15122 3.2003916 root 1 Root_unresolved Root_unresolved 82.4 1.06e-16   NR MEA3247279.1 2026742 g20879 i0 52.7 1.96402877697842 91 37 96 3 9 275 144 230 MEA3247279.1 SDR family oxidoreductase [Gemmatimonadota bacterium] diamond 546 82.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
32794301 32794301 PRJNA492406_P_NODE_22740_length_270_cov_1.213198_g22441_i0 PRJNA492406 22740 270 1.213198 3.2756346 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 63.9 1.8e-9   NR NUQ10938.1 2026741 g22441 i0 42.5 1.75555555555556 87 47 96.7 2 262 2 77 160 NUQ10938.1 protein kinase [Gemmatimonadaceae bacterium] diamond 474 63.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;