RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA492406" and tax_clade = "Apusozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_clade 1

  • Apusozoa · 3 ✖

bioproject 1

  • PRJNA492406 · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
452855 452855 PRJNA492406_P_NODE_6861_length_461_cov_1.121134_g6562_i0 PRJNA492406 6861 461 1.121134 5.16842774 Amastigomonas marina 234594 Root_unresolved Root_unresolved 372 3.02e-98   NTclustered gi|31982973|gb|AY236711.1| 234594 g6562 i0 82.284 87.4577006507592 429 76 93 0 1 429 1063 1491 Amastigomonas marina heat shock protein 90 (Hsp90) gene, partial cds blastn 40318 372 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Amastigomonas Amastigomonas marina
23404497 23404497 PRJNA492406_P_NODE_10379_length_383_cov_1.241935_g10080_i0 PRJNA492406 10379 383 1.241935 4.75661105 Thecamonas trahens 529818 Root_unresolved Root_unresolved 224 7.319999999999999e-54   NTclustered gi|923125359|ref|XM_013900694.1| 461836 g10080 i0 82.879 49.3289817232376 257 36 66 6 37 289 277 529 Thecamonas trahens ATCC 50062 calmodulin (AMSG_07687), mRNA blastn 18893 224 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
29886998 29886998 PRJNA492406_P_NODE_26631_length_251_cov_0.865169_g26332_i0 PRJNA492406 26631 251 0.865169 2.17157419 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 55.1 1.92e-6   NR XP_013757752.1 461836 g26332 i0 35.5 0.908366533864542 76 48 90.8 1 251 24 833 907 XP_013757752.1 ubiquitin carboxyl-terminal hydrolase 34 [Thecamonas trahens ATCC 50062] diamond 228 55.1 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;