RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA492406", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 7 ✖

tax_clade 1

  • Amoebozoa · 7 ✖

bioproject 1

  • PRJNA492406 · 7 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4279390 4279390 PRJNA492406_P_NODE_16124_length_312_cov_1.288703_g15825_i0 PRJNA492406 16124 312 1.288703 4.02075336 Pyxidicula operculata 1078852 Tubulinea other_Eukaryota 501 2.41e-137   NTclustered gi|345452598|gb|JF694317.1| 1078852 g15825 i0 97.611 97.1378205128205 293 6 94 1 20 312 640 349 Pyxidicula operculata clone 2 actin gene, partial cds blastn 30307 501 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida   Pyxidicula Pyxidicula operculata
8752221 8752221 PRJNA492406_P_NODE_31187_length_242_cov_2.402367_g30888_i0 PRJNA492406 31187 242 2.402367 5.81372814 Tubulinea 555369 Tubulinea other_Eukaryota 448 2.3799999999999995e-121   NTclustered gi|553062370|gb|KF470967.1| 5778 g30888 i0 100 99.9669421487603 242 0 100 0 1 242 73 314 Vermamoeba vermiformis strain Peru-1 18S ribosomal RNA gene, partial sequence blastn 24192 448 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
10027613 10027613 PRJNA492406_P_NODE_9108_length_405_cov_3.189759_g8809_i0 PRJNA492406 9108 405 3.189759 12.91852395 Vermamoeba 1260114 Tubulinea other_Eukaryota 732 0   NTclustered gi|909719645|gb|KT185625.1| 5778 g8809 i0 99.259 45.3777777777778 405 3 100 0 1 405 5544 5140 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 18378 732 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
15755246 15755246 PRJNA492406_P_NODE_29373_length_246_cov_0.890173_g29074_i0 PRJNA492406 29373 246 0.890173 2.18982558 Pyxidicula operculata 1078852 Tubulinea other_Eukaryota 322 1.53e-83   NTclustered gi|345452598|gb|JF694317.1| 1078852 g29074 i0 90.244 91.7276422764228 246 24 100 0 1 246 307 62 Pyxidicula operculata clone 2 actin gene, partial cds blastn 22565 322 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida   Pyxidicula Pyxidicula operculata
20854137 20854137 PRJNA492406_P_NODE_22597_length_270_cov_13.360406_g22298_i0 PRJNA492406 22597 270 13.360406 36.0730962 Pyxidicula operculata 1078852 Tubulinea other_Eukaryota 477 3.4499999999999986e-130   NTclustered gi|345294028|gb|JF694284.1| 1078852 g22298 i0 98.519 52.5074074074074 270 4 100 0 1 270 232 501 Pyxidicula operculata small subunit ribosomal RNA gene, partial sequence blastn 14177 477 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida   Pyxidicula Pyxidicula operculata
20854531 20854531 PRJNA492406_P_NODE_9157_length_404_cov_14.839879_g8858_i0 PRJNA492406 9157 404 14.839879 59.95311116 Pyxidicula operculata 1078852 Tubulinea other_Eukaryota 747 0   NTclustered gi|345294028|gb|JF694284.1| 1078852 g8858 i0 100 97.3044554455445 404 0 100 0 1 404 819 1222 Pyxidicula operculata small subunit ribosomal RNA gene, partial sequence blastn 39311 747 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida   Pyxidicula Pyxidicula operculata
23404564 23404564 PRJNA492406_P_NODE_12619_length_351_cov_4.208633_g12320_i0 PRJNA492406 12619 351 4.208633 14.77230183 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 512 1.27e-140   NTclustered gi|909719647|gb|KT185627.1| 5778 g12320 i0 93.162 50.4273504273504 351 20 100 3 1 351 19319 19665 Vermamoeba vermiformis isolate BCP-EM3VF21-2 mitochondrion, complete genome blastn 17700 512 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;