RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA492363", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 4 ✖

tax_kingdom 1

  • Bacillati · 4 ✖

bioproject 1

  • PRJNA492363 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25625076 25625076 PRJNA492363_S_NODE_51609_length_232_cov_3.105263_g50788_i0 PRJNA492363 51609 232 3.105263 7.20421016 root 1 Root_unresolved Root_unresolved 76.8 1.23e-9   NTclustered gi|2624195583|gb|CP129199.1| 2116 g50788 i0 100 189.172413793103 41 0 18 0 1 41 162 122 Malacoplasma iowae strain M817 chromosome, complete genome blastn 43888 76.8 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Mycoplasmoidaceae Malacoplasma Malacoplasma iowae
26111138 26111138 PRJNA492363_S_NODE_63485_length_227_cov_1.108434_g62664_i0 PRJNA492363 63485 227 1.108434 2.51614518 Malacoplasma iowae 2116 Bacteria Bacteria 86.1 1.99e-12   NTclustered gi|2624195583|gb|CP129199.1| 2116 g62664 i0 100 187.568281938326 46 0 20 0 182 227 123 168 Malacoplasma iowae strain M817 chromosome, complete genome blastn 42578 86.1 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Mycoplasmoidaceae Malacoplasma Malacoplasma iowae
26305154 26305154 PRJNA492363_S_NODE_101054_length_201_cov_0.914286_g100233_i0 PRJNA492363 101054 201 0.914286 1.83771486 Spiroplasma 2132 Bacteria Bacteria 52.8 0.017   NTclustered gi|1297062390|gb|CP025057.1| 1336749 g100233 i0 100 0.278606965174129 28 0 14 0 61 88 532711 532684 Spiroplasma floricola 23-6 chromosome, complete genome blastn 56 52.8 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma floricola
26382766 26382766 PRJNA492363_S_NODE_36959_length_238_cov_1.446328_g36138_i0 PRJNA492363 36959 238 1.446328 3.44226064 Malacoplasma iowae 2116 Bacteria Bacteria 86.1 2.11e-12   NTclustered gi|2624195583|gb|CP129199.1| 2116 g36138 i0 100 174.575630252101 46 0 19 0 1 46 163 118 Malacoplasma iowae strain M817 chromosome, complete genome blastn 41549 86.1 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Mycoplasmoidaceae Malacoplasma Malacoplasma iowae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;