RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA492363", tax_clade = "Sar" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA492363 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25975307 25975307 PRJNA492363_S_NODE_77812_length_217_cov_2.224359_g76991_i0 PRJNA492363 77812 217 2.224359 4.82685903 Hyaloperonospora brassicae 162125 SAR_Eukaryotes SAR_Eukaryotes 109 7.65e-26   NR CAI5737126.1 162125 g76991 i0 89.8 0.815668202764977 59 6 81.6 0 216 40 126 184 CAI5737126.1 unnamed protein product [Hyaloperonospora brassicae] diamond 177 109 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora brassicae
26246428 26246428 PRJNA492363_S_NODE_12390_length_278_cov_1.474654_g11569_i0 PRJNA492363 12390 278 1.474654 4.09953812 Hyaloperonospora parasitica 123356 SAR_Eukaryotes SAR_Eukaryotes 254 6.54e-63   NTclustered gi|188496780|emb|CU856298.2| 123356 g11569 i0 85.306 0.881294964028777 245 36 88 0 1 245 81488 81244 H.parasitica DNA sequence from clone HpEmoy2-6G8, complete sequence blastn 245 254 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora parasitica
33071673 33071673 PRJNA492363_S_NODE_11925_length_282_cov_1.447964_g11104_i0 PRJNA492363 11925 282 1.447964 4.08325848 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 58.9 9.48e-8   NR XP_009528625.1 67593 g11104 i0 36.9 0.893617021276596 84 50 88.3 2 3 251 146 227 XP_009528625.1 hypothetical protein PHYSODRAFT_301661 [Phytophthora sojae] diamond 252 58.9 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;