RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA492363", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJNA492363 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25567295 25567295 PRJNA492363_S_NODE_95089_length_204_cov_1.342657_g94268_i0 PRJNA492363 95089 204 1.342657 2.73902028 Caenorhabditis elegans 6239 Nematoda Nematoda 372 1.2e-98   NTclustered gi|1845974497|ref|NM_066632.6| 6239 g94268 i0 99.51 4.02941176470588 204 1 100 0 1 204 549 346 Caenorhabditis elegans Cyclic nucleotide-gated channel (tax-4), mRNA blastn 822 372 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
26518217 26518217 PRJNA492363_S_NODE_100768_length_201_cov_1.371429_g99947_i0 PRJNA492363 100768 201 1.371429 2.75657229 Caenorhabditis elegans 6239 Nematoda Nematoda 287 4.399999999999999e-73   NTclustered gi|1845974497|ref|NM_066632.6| 6239 g99947 i0 100 214.557213930348 155 0 77 0 1 155 344 190 Caenorhabditis elegans Cyclic nucleotide-gated channel (tax-4), mRNA blastn 43126 287 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;