RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA492280" and tax_phylum = "Chlorobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA492280 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5555632 5555632 PRJNA492280_P_NODE_29345_length_151_cov_12.096491_g29238_i0 PRJNA492280 29345 151 12.096491 18.26570141 Chlorobaculum tepidum 1097 Bacteria Bacteria 69.4 1.22e-7   NTclustered gi|21672293|gb|AE006470.1| 194439 g29238 i0 82.895 0.503311258278146 76 13 50 0 76 151 668849 668924 Chlorobium tepidum TLS, complete genome blastn 76 69.4 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobaculum Chlorobaculum tepidum
31024307 31024307 PRJNA492280_P_NODE_14375_length_164_cov_4.850394_g14268_i0 PRJNA492280 14375 164 4.850394 7.95464616 Chlorobiota bacterium 2268192 Bacteria Bacteria 53.9 7.32e-7   NR KAA0253370.1 2268192 g14268 i0 100 0.859756097560976 24 0 43.9 0 75 4 19 42 KAA0253370.1 MAG: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD [Chlorobiota bacterium] diamond 141 53.9 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;