RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA492280", tax_kingdom = "Thermoproteati" and tax_superkingdom = "Archaea"

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tax_phylum 2

analysis 2

tax_superkingdom 1

  • Archaea · 4 ✖

tax_kingdom 1

  • Thermoproteati · 4 ✖

bioproject 1

  • PRJNA492280 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
452136 452136 PRJNA492280_P_NODE_31721_length_151_cov_2.833333_g31614_i0 PRJNA492280 31721 151 2.833333 4.27833283 Pyrobaculum aerophilum 13773 Archaea Archaea 135 1.19e-27   NTclustered gi|18308975|gb|AE009441.1| 178306 g31614 i0 100 0.973509933774834 73 0 97 0 4 76 1167221 1167293 Pyrobaculum aerophilum str. IM2, complete genome blastn 147 135 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Pyrobaculum Pyrobaculum aerophilum
452158 452158 PRJNA492280_P_NODE_33781_length_150_cov_3.654867_g33674_i0 PRJNA492280 33781 150 3.654867 5.4823005 Pyrobaculum aerophilum 13773 Archaea Archaea 268 1.11e-67   NTclustered gi|18308975|gb|AE009441.1| 178306 g33674 i0 99.324 0.986666666666667 148 1 99 0 3 150 2046668 2046815 Pyrobaculum aerophilum str. IM2, complete genome blastn 148 268 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Pyrobaculum Pyrobaculum aerophilum
3002689 3002689 PRJNA492280_P_NODE_24623_length_164_cov_2.637795_g24516_i0 PRJNA492280 24623 164 2.637795 4.3259838 Ignisphaera sp. 2268142 Archaea Archaea 55.5 4.08e-7   NR MCI4437658.1 2268142 g24516 i0 100 0.439024390243902 24 0 43.9 0 162 91 212 235 MCI4437658.1 hypothetical protein [Ignisphaera sp.] diamond 72 55.5 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcaceae Ignisphaera Ignisphaera sp.
31024309 31024309 PRJNA492280_P_NODE_21355_length_164_cov_3.094488_g21248_i0 PRJNA492280 21355 164 3.094488 5.07496032 Nitrosopumilus sp. 2024843 Archaea Archaea 43.1 0.00926   NR MDA7495390.1 2024843 g21248 i0 44.2 0.951219512195122 52 26 89.6 2 8 154 241 292 MDA7495390.1 hypothetical protein [Nitrosopumilus sp.] diamond 156 43.1 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosopumilus Nitrosopumilus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;