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contig_metadata

29 rows where bioproject = "PRJNA492280", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 29 ✖

tax_kingdom 1

  • Pseudomonadati · 29 ✖

bioproject 1

  • PRJNA492280 · 29 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
452102 452102 PRJNA492280_P_NODE_29441_length_151_cov_8.561404_g29334_i0 PRJNA492280 29441 151 8.561404 12.92772004 Anaeromyxobacter paludicola 2918171 Bacteria Bacteria 102 1.21e-17   NTclustered gi|2199271117|dbj|AP025592.1| 2918171 g29334 i0 91.781 8.25165562913907 73 6 48 0 4 76 1696249 1696321 Anaeromyxobacter paludicola DNA, complete genome blastn 1246 102 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae Anaeromyxobacter Anaeromyxobacter paludicola
2374444 2374444 PRJNA492280_P_NODE_25702_length_164_cov_2.393701_g25595_i0 PRJNA492280 25702 164 2.393701 3.92566964 Pseudomonadati 3379134 Bacteria Bacteria 86.1 1.35e-12   NTclustered gi|1127353251|gb|CP016211.1| 888845 g25595 i0 87.838 40.6890243902439 74 8 45 1 89 161 771653 771580 Minicystis rosea strain DSM 24000 chromosome, complete genome blastn 6673 86.1 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Minicystis Minicystis rosea
3002679 3002679 PRJNA492280_P_NODE_23623_length_164_cov_2.779528_g23516_i0 PRJNA492280 23623 164 2.779528 4.55842592 Minicystis rosea 888845 Bacteria Bacteria 130 6.15e-26   NTclustered gi|1127353251|gb|CP016211.1| 888845 g23516 i0 98.63 9.50609756097561 73 1 45 0 4 76 12822890 12822818 Minicystis rosea strain DSM 24000 chromosome, complete genome blastn 1559 130 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Minicystis Minicystis rosea
4279042 4279042 PRJNA492280_P_NODE_2544_length_293_cov_10.484375_g2437_i0 PRJNA492280 2544 293 10.484375 30.71921875 Labilithrix luteola 1391654 Bacteria Bacteria 444 3.84e-120   NTclustered gi|913610804|gb|CP012333.1| 1391654 g2437 i0 94.444 149.778156996587 288 16 98 0 3 290 7090450 7090163 Labilithrix luteola strain DSM 27648, complete genome blastn 43885 444 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
8105052 8105052 PRJNA492280_P_NODE_1907_length_328_cov_4.601375_g1800_i0 PRJNA492280 1907 328 4.601375 15.09251 Pendulispora albinea 2741071 Bacteria Bacteria 202 2.9e-47   NTclustered gi|2698035964|gb|CP089984.1| 2741071 g1800 i0 90.728 108.158536585366 151 14 70 0 5 155 7191571 7191421 Pendulispora albinea strain MSr11954 chromosome, complete genome blastn 35476 202 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora albinea
10655774 10655774 PRJNA492280_P_NODE_31729_length_151_cov_2.824561_g31622_i0 PRJNA492280 31729 151 2.824561 4.26508711 Pajaroellobacter abortibovis 1882918 Bacteria Bacteria 134 4.28e-27   NTclustered gi|1127377833|gb|CP016908.1| 1882918 g31622 i0 98.667 45.6225165562914 75 1 50 0 74 148 1550899 1550973 Pajaroellobacter abortibovis strain BTF92-0548A/99-0131, genome blastn 6889 134 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Pajaroellobacter Pajaroellobacter abortibovis
10655832 10655832 PRJNA492280_P_NODE_5249_length_223_cov_3.295699_g5142_i0 PRJNA492280 5249 223 3.295699 7.34940877 Pendulispora rubella 2741070 Bacteria Bacteria 207 3.99e-49   NTclustered gi|2698045512|gb|CP089929.1| 2741070 g5142 i0 84.545 11.8251121076233 220 23 98 8 2 220 9852675 9852466 Pendulispora rubella strain MSr11368 chromosome, complete genome blastn 2637 207 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora rubella
11930555 11930555 PRJNA492280_P_NODE_19510_length_164_cov_3.417323_g19403_i0 PRJNA492280 19510 164 3.417323 5.60440972 Anaeromyxobacter dehalogenans 161493 Bacteria Bacteria 54.7 0.004   NTclustered gi|219952977|gb|CP001359.1| 455488 g19403 i0 100 0.176829268292683 29 0 18 0 24 52 74358 74330 Anaeromyxobacter dehalogenans 2CP-1 chromosome, complete genome blastn 29 54.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae Anaeromyxobacter Anaeromyxobacter dehalogenans
11930776 11930776 PRJNA492280_P_NODE_850_length_477_cov_8.902273_g755_i0 PRJNA492280 850 477 8.902273 42.46384221 Pendulispora rubella 2741070 Bacteria Bacteria 508 2.29e-139   NTclustered gi|2698045512|gb|CP089929.1| 2741070 g755 i0 86.105 197.819706498952 475 63 99 3 5 477 7289965 7289492 Pendulispora rubella strain MSr11368 chromosome, complete genome blastn 94360 508 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora rubella
15754697 15754697 PRJNA492280_P_NODE_33393_length_150_cov_4.035398_g33286_i0 PRJNA492280 33393 150 4.035398 6.053097 Pendulispora albinea 2741071 Bacteria Bacteria 139 9.12e-29   NTclustered gi|2698035964|gb|CP089984.1| 2741071 g33286 i0 84.138 0.966666666666667 145 21 96 2 7 150 6539901 6539758 Pendulispora albinea strain MSr11954 chromosome, complete genome blastn 145 139 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora albinea
19577921 19577921 PRJNA492280_P_NODE_416_length_641_cov_9.399007_g343_i0 PRJNA492280 416 641 9.399007 60.24763487 Labilithrix luteola 1391654 Bacteria Bacteria 651 0   NTclustered gi|913610804|gb|CP012333.1| 1391654 g343 i0 94.749 123.589703588144 419 21 97 1 1 418 3942863 3942445 Labilithrix luteola strain DSM 27648, complete genome blastn 79221 651 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
20853574 20853574 PRJNA492280_P_NODE_1657_length_346_cov_19.394822_g1551_i0 PRJNA492280 1657 346 19.394822 67.10608412 Pendulispora albinea 2741071 Bacteria Bacteria 331 3.76e-86   NTclustered gi|2698035964|gb|CP089984.1| 2741071 g1551 i0 88.406 95.0231213872832 276 30 79 2 63 337 3589300 3589026 Pendulispora albinea strain MSr11954 chromosome, complete genome blastn 32878 331 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora albinea
26633195 26633195 PRJNA492280_P_NODE_21881_length_164_cov_3.000000_g21774_i0 PRJNA492280 21881 164 3 4.92 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 49.7 1.18e-5   NR MSP37504.1 2026735 g21774 i0 95.8 0.439024390243902 24 1 43.9 0 73 2 22 45 MSP37504.1 30S ribosomal protein S9 [Deltaproteobacteria bacterium] diamond 72 49.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
26680786 26680786 PRJNA492280_P_NODE_13021_length_164_cov_5.779528_g12914_i0 PRJNA492280 13021 164 5.779528 9.47842592 Pseudomonadati 3379134 Bacteria Bacteria 52 6.82e-6   NR TMA91203.1 2026735 g12914 i0 91.7 1.31707317073171 24 2 43.9 0 76 5 67 90 TMA91203.1 MAG: ABC transporter substrate-binding protein [Deltaproteobacteria bacterium] diamond 216 52.4 0.99236641221374 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
26743841 26743841 PRJNA492280_P_NODE_23741_length_164_cov_2.763780_g23634_i0 PRJNA492280 23741 164 2.76378 4.5325992 Pseudomonadati 3379134 Bacteria Bacteria 51.6 9.34e-6   NR TMA88567.1 2026735 g23634 i0 95.8 1.75609756097561 24 1 43.9 0 91 162 82 105 TMA88567.1 MAG: extracellular solute-binding protein [Deltaproteobacteria bacterium] diamond 288 51.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
26839501 26839501 PRJNA492280_P_NODE_31661_length_151_cov_2.912281_g31554_i0 PRJNA492280 31661 151 2.912281 4.39754431 Bacteria 2 Bacteria Bacteria 45.8 2.27e-4   NR MCC7382713.1 2026735 g31554 i0 42.4 6.37748344370861 66 17 89.4 1 135 1 2 67 MCC7382713.1 RNA-binding protein [Deltaproteobacteria bacterium] diamond 963 45.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27740111 27740111 PRJNA492280_P_NODE_11404_length_164_cov_12.078740_g11297_i0 PRJNA492280 11404 164 12.07874 19.8091336 Labilithrix sp. 1971228 Bacteria Bacteria 43.5 0.00686   NR MBX3230791.1 1971228 g11297 i0 79.2 1.31707317073171 24 5 43.9 0 5 76 145 168 MBX3230791.1 glycerol-3-phosphate dehydrogenase/oxidase [Labilithrix sp.] diamond 216 43.5 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix sp.
28150422 28150422 PRJNA492280_P_NODE_30305_length_151_cov_4.500000_g30198_i0 PRJNA492280 30305 151 4.5 6.795 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 43.9 0.00378   NR MDP2605378.1 2026735 g30198 i0 87.5 0.47682119205298 24 3 47.7 0 78 149 25 48 MDP2605378.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 72 43.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28308214 28308214 PRJNA492280_P_NODE_27006_length_163_cov_2.976190_g26899_i0 PRJNA492280 27006 163 2.97619 4.8511897 Archangium sp. 1872627 Bacteria Bacteria 52 6.63e-6   NR HZI03825.1 1872627 g26899 i0 92 10.1226993865031 25 2 46 0 3 77 327 351 HZI03825.1 hypothetical protein [Archangium sp.] diamond 1650 52 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium sp.
28419043 28419043 PRJNA492280_P_NODE_21006_length_164_cov_3.165354_g20899_i0 PRJNA492280 21006 164 3.165354 5.19118056 Pseudomonadati 3379134 Bacteria Bacteria 46.6 5.62e-4   NR MBM2803281.1 2026735 g20899 i0 69 1.0609756097561 29 9 53 0 160 74 95 123 MBM2803281.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 174 46.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28529333 28529333 PRJNA492280_P_NODE_31087_length_151_cov_3.456140_g30980_i0 PRJNA492280 31087 151 3.45614 5.2187714 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 40 0.0201   NR TMQ07108.1 2026735 g30980 i0 68.2 0.437086092715232 22 7 43.7 0 151 86 33 54 TMQ07108.1 MAG: hypothetical protein E6J91_36475 [Deltaproteobacteria bacterium] diamond 66 40 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28687285 28687285 PRJNA492280_P_NODE_19227_length_164_cov_3.464567_g19120_i0 PRJNA492280 19227 164 3.464567 5.68188988 Archangiaceae bacterium 2684409 Bacteria Bacteria 42.4 0.0178   NR MBK7862874.1 2684409 g19120 i0 83.3 0.439024390243902 24 4 43.9 0 4 75 910 933 MBK7862874.1 error-prone DNA polymerase [Archangiaceae bacterium] diamond 72 42.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae   Archangiaceae bacterium
28687293 28687293 PRJNA492280_P_NODE_34807_length_150_cov_2.539823_g34700_i0 PRJNA492280 34807 150 2.539823 3.8097345 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 50.8 4.49e-6   NR MDP2344456.1 2026735 g34700 i0 77.3 0.44 22 5 44 0 11 76 35 56 MDP2344456.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 66 50.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29097582 29097582 PRJNA492280_P_NODE_21688_length_164_cov_3.023622_g21581_i0 PRJNA492280 21688 164 3.023622 4.95874008 Myxococcota bacterium 2818507 Bacteria Bacteria 49.7 4.51e-5   NR HEY1098488.1 2818507 g21581 i0 95.8 0.439024390243902 24 1 43.9 0 4 75 424 447 HEY1098488.1 sigma-54 dependent transcriptional regulator [Myxococcota bacterium] diamond 72 49.7 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
29476060 29476060 PRJNA492280_P_NODE_34290_length_150_cov_3.168142_g34183_i0 PRJNA492280 34290 150 3.168142 4.752213 Myxococcales bacterium 2026763 Bacteria Bacteria 42 0.0193   NR MCA9648726.1 2026763 g34183 i0 66.7 2.06 24 8 48 0 74 3 320 343 MCA9648726.1 cytochrome P450 [Myxococcales bacterium] diamond 309 42 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
30076276 30076276 PRJNA492280_P_NODE_21452_length_164_cov_3.070866_g21345_i0 PRJNA492280 21452 164 3.070866 5.03622024 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 48.1 1.58e-4   NR MBM4254918.1 2026735 g21345 i0 95.2 1.53658536585366 21 1 38.4 0 66 4 69 89 MBM4254918.1 hydantoinase/carbamoylase family amidase [Deltaproteobacteria bacterium] diamond 252 48.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
30897991 30897991 PRJNA492280_P_NODE_11694_length_164_cov_8.755906_g11587_i0 PRJNA492280 11694 164 8.755906 14.35968584 Myxococcales bacterium 2026763 Bacteria Bacteria 77.4 7.61e-15   NR NMB74746.1 2026763 g11587 i0 66.7 0.98780487804878 54 18 98.8 0 162 1 505 558 NMB74746.1 DUF1156 domain-containing protein [Myxococcales bacterium] diamond 162 77.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
31040562 31040562 PRJNA492280_P_NODE_30035_length_151_cov_5.026316_g29928_i0 PRJNA492280 30035 151 5.026316 7.58973716 Bacteria candidate phyla 1783234 Bacteria Bacteria 51.6 6.02e-6   NR TMA67379.1 2026735 g29928 i0 100 3.97350993377483 25 0 49.7 0 148 74 24 48 TMA67379.1 MAG: ABC transporter substrate-binding protein [Deltaproteobacteria bacterium] diamond 600 51.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31134728 31134728 PRJNA492280_P_NODE_16335_length_164_cov_4.133858_g16228_i0 PRJNA492280 16335 164 4.133858 6.77952712 Bacteria candidate phyla 1783234 Bacteria Bacteria 55.1 5.62e-7   NR TMA56753.1 2026735 g16228 i0 100 3.27439024390244 24 0 43.9 0 75 4 488 511 TMA56753.1 MAG: thiamine pyrophosphate-requiring protein [Deltaproteobacteria bacterium] diamond 537 55.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;