RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA492280", tax_kingdom = "Metazoa" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 2 ✖

tax_kingdom 1

  • Metazoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA492280 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3002723 3002723 PRJNA492280_P_NODE_28763_length_153_cov_17.413793_g28656_i0 PRJNA492280 28763 153 17.413793 26.64310329 Keratella tropica 885372 Rotifera other_Eukaryota 272 8.84e-69   NTclustered gi|398258127|gb|JN579390.1| 885372 g28656 i0 99.333 98.0392156862745 150 1 98 0 4 153 361 510 Keratella tropica isolate T15 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence blastn 15000 272 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Keratella Keratella tropica
24050901 24050901 PRJNA492280_P_NODE_31159_length_151_cov_3.359649_g31052_i0 PRJNA492280 31159 151 3.359649 5.07306999 Ploima 84394 Rotifera other_Eukaryota 274 2.42e-69   NTclustered gi|1845957847|gb|MT522671.1| 47121 g31052 i0 99.338 100 151 1 100 0 1 151 941 1091 Notommata copeus isolate JH_005H10 small subunit ribosomal RNA gene, partial sequence blastn 15100 274 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Notommatidae Notommata Notommata copeus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;