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contig_metadata

11 rows where bioproject = "PRJNA492280", tax_clade = "Sar" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 11 ✖

tax_clade 1

  • Sar · 11 ✖

bioproject 1

  • PRJNA492280 · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1726596 1726596 PRJNA492280_P_NODE_11002_length_165_cov_4.390625_g10895_i0 PRJNA492280 11002 165 4.390625 7.24453125 Plasmopara halstedii 4781 SAR_Eukaryotes SAR_Eukaryotes 130 6.2e-26   NTclustered gi|1378159297|ref|XM_024728901.1| 4781 g10895 i0 97.368 5.17575757575758 76 2 46 0 1 76 148 73 Plasmopara halstedii uncharacterized protein (PHALS_13197), partial mRNA blastn 854 130 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii
1726619 1726619 PRJNA492280_P_NODE_1302_length_387_cov_4.665714_g1202_i0 PRJNA492280 1302 387 4.665714 18.05631318 Paralagenidium karlingii 1440115 SAR_Eukaryotes SAR_Eukaryotes 122 2.7799999999999996e-23   NTclustered gi|2554484921|ref|NC_080886.1| 1440115 g1202 i0 89.691 21.71834625323 97 9 25 1 165 260 41766 41670 Paralagenidium karlingii isolate 19-09020 mitochondrion, complete genome blastn 8405 122 1 Eukaryota Sar   Oomycota Peronosporomycetes     Paralagenidium Paralagenidium karlingii
1726916 1726916 PRJNA492280_P_NODE_962_length_448_cov_4.328467_g865_i0 PRJNA492280 962 448 4.328467 19.39153216 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 274 8.499999999999998e-69   NTclustered gi|325194231|emb|FR825088.1| 890382 g865 i0 93.085 1.10267857142857 188 11 87 2 259 446 935 1120 Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 blastn 494 274 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
8105100 8105100 PRJNA492280_P_NODE_24207_length_164_cov_2.700787_g24100_i0 PRJNA492280 24207 164 2.700787 4.42929068 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 135 1.32e-27   NTclustered gi|325194423|emb|FR825253.1| 890382 g24100 i0 100 83.9024390243902 73 0 88 0 4 76 828 756 Albugo laibachii Nc14, genomic contig CONTIG_1950_NC14_v4_1284_22758 blastn 13760 135 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
11302056 11302056 PRJNA492280_P_NODE_18749_length_164_cov_3.543307_g18642_i0 PRJNA492280 18749 164 3.543307 5.81102348 Hyaloperonospora 184462 SAR_Eukaryotes SAR_Eukaryotes 141 2.84e-29   NTclustered gi|33520229|gb|AY273974.1| 162125 g18642 i0 100 87.969512195122 76 0 89 0 89 164 129 204 Hyaloperonospora brassicae large subunit ribosomal RNA gene, partial sequence blastn 14427 141 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora brassicae
14480467 14480467 PRJNA492280_P_NODE_10092_length_169_cov_5.227273_g9985_i0 PRJNA492280 10092 169 5.227273 8.83409137 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 272 9.95e-69   NTclustered gi|325194231|emb|FR825088.1| 890382 g9985 i0 96.914 1.55029585798817 162 5 96 0 5 166 1368 1207 Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 blastn 262 272 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
14480558 14480558 PRJNA492280_P_NODE_21692_length_164_cov_3.023622_g21585_i0 PRJNA492280 21692 164 3.023622 4.95874008 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 189 1e-43   NTclustered gi|325194231|emb|FR825088.1| 890382 g21585 i0 84.884 1.04878048780488 172 16 100 3 1 164 344 513 Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 blastn 172 189 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
27487192 27487192 PRJNA492280_P_NODE_17063_length_164_cov_3.937008_g16956_i0 PRJNA492280 17063 164 3.937008 6.45669312 Phytophthora megakarya 4795 SAR_Eukaryotes SAR_Eukaryotes 42.4 0.0115   NR OWZ01316.1 4795 g16956 i0 33.3 1.09756097560976 60 33 97 1 4 162 101 160 OWZ01316.1 hypothetical protein PHMEG_00027324 [Phytophthora megakarya] diamond 180 42.4 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megakarya
29366125 29366125 PRJNA492280_P_NODE_7029_length_197_cov_3.075000_g6922_i0 PRJNA492280 7029 197 3.075 6.05775 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 99 5.42e-24   NR KAG1694345.1 4784 g6922 i0 70.4 3.24365482233503 71 15 99 1 195 1 64 134 KAG1694345.1 40S ribosomal protein S4 [Phytophthora capsici] diamond 639 99.8 0.991983967935872 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
30487216 30487216 PRJNA492280_P_NODE_10793_length_165_cov_7.125000_g10686_i0 PRJNA492280 10793 165 7.125 11.75625 Saprolegnia parasitica CBS 223.65 695850 SAR_Eukaryotes SAR_Eukaryotes 86.3 4.38e-20   NR XP_012196500.1 695850 g10686 i0 77.4 6.72727272727273 53 12 96.4 0 161 3 40 92 XP_012196500.1 60S ribosomal protein L31 [Saprolegnia parasitica CBS 223.65] diamond 1110 86.3 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
32747501 32747501 PRJNA492280_P_NODE_22760_length_164_cov_2.897638_g22653_i0 PRJNA492280 22760 164 2.897638 4.75212632 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 57.8 6.35e-8   NR XP_024582876.1 4781 g22653 i0 50 21.1463414634146 68 20 98.8 1 163 2 677 744 XP_024582876.1 cellulose synthase 3 [Plasmopara halstedii] diamond 3468 57.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;