RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA492280", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJNA492280 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28008554 28008554 PRJNA492280_P_NODE_22645_length_164_cov_2.913386_g22538_i0 PRJNA492280 22645 164 2.913386 4.77795304 Metazoa 33208 Nematoda Nematoda 43.9 0.00118   NR KAK6049970.1 27828 g22538 i0 51.1 10.2621951219512 45 22 82.3 0 157 23 9 53 KAK6049970.1 hypothetical protein COOONC_12524 [Cooperia oncophora] diamond 1683 44.3 0.99097065462754 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Cooperia Cooperia oncophora
32542751 32542751 PRJNA492280_P_NODE_30859_length_151_cov_3.745614_g30752_i0 PRJNA492280 30859 151 3.7456140000000002 5.65587714 Gnathostoma spinigerum 75299 Nematoda Nematoda 45.1 0.00114   NR MFH4978993.1 75299 g30752 i0 83.3 0.47682119205298 24 4 47.7 0 147 76 58 81 MFH4978993.1 hypothetical protein [Gnathostoma spinigerum] diamond 72 45.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Gnathostomatidae Gnathostoma Gnathostoma spinigerum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;