RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA489308" and tax_phylum = "Ignavibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA489308 · 6 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17675755 17675755 PRJNA489308_P_NODE_29794_length_253_cov_1.711111_g29718_i0 PRJNA489308 29794 253 1.711111 4.32911083 Bacteria 2 Bacteria Bacteria 135 9.01e-36   NR OGU31507.1 1798421 g29718 i0 83.8 24.5217391304348 74 12 87.7 0 251 30 108 181 OGU31507.1 MAG: NADP-dependent isocitrate dehydrogenase [Ignavibacteria bacterium GWA2_55_11] diamond 6204 136 0.992647058823529 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium GWA2_55_11
28624003 28624003 PRJNA489308_P_NODE_12407_length_332_cov_1.849421_g12331_i0 PRJNA489308 12407 332 1.849421 6.14007772 Ignavibacteriales bacterium 2049428 Bacteria Bacteria 58.9 2.17e-7   NR MBI3123741.1 2049428 g12331 i0 45.2 1.12048192771084 62 28 50.6 2 252 85 194 255 MBI3123741.1 hypothetical protein [Ignavibacteriales bacterium] diamond 372 58.9 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales     Ignavibacteriales bacterium
28939688 28939688 PRJNA489308_P_NODE_22708_length_276_cov_1.704433_g22632_i0 PRJNA489308 22708 276 1.704433 4.70423508 Ignavibacteriaceae bacterium 2651163 Bacteria Bacteria 67.8 5.1e-12   NR MCW8816488.1 2651163 g22632 i0 44.6 0.706521739130435 65 36 70.7 0 62 256 72 136 MCW8816488.1 hypothetical protein [Ignavibacteriaceae bacterium] diamond 195 67.8 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriaceae   Ignavibacteriaceae bacterium
30013298 30013298 PRJNA489308_P_NODE_3991_length_511_cov_2.442922_g3915_i0 PRJNA489308 3991 511 2.442922 12.48333142 Ignavibacterium sp. 2651167 Bacteria Bacteria 54.3 4.83e-5   NR MEJ5261863.1 2651167 g3915 i0 30.5 0.75146771037182 128 84 74 3 510 133 280 404 MEJ5261863.1 T9SS type A sorting domain-containing protein [Ignavibacterium sp.] diamond 384 54.3 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriaceae Ignavibacterium Ignavibacterium sp.
30834656 30834656 PRJNA489308_P_NODE_6934_length_409_cov_1.931548_g6858_i0 PRJNA489308 6934 409 1.931548 7.90003132 Ignavibacteriaceae bacterium 2651163 Bacteria Bacteria 52.4 1e-4   NR MCK9210632.1 2651163 g6858 i0 31.7 0.880195599022005 120 75 87.3 3 9 365 762 875 MCK9210632.1 T9SS type A sorting domain-containing protein [Ignavibacteriaceae bacterium] diamond 360 52.4 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriaceae   Ignavibacteriaceae bacterium
31688193 31688193 PRJNA489308_P_NODE_7997_length_387_cov_2.095541_g7921_i0 PRJNA489308 7997 387 2.095541 8.10974367 Ignavibacteriaceae bacterium 2651163 Bacteria Bacteria 212 6.12e-63   NR MBX2977039.1 2651163 g7921 i0 72.1 50.0387596899225 129 35 99.2 1 2 385 346 474 MBX2977039.1 phosphoenolpyruvate carboxykinase (GTP) [Ignavibacteriaceae bacterium] diamond 19365 212 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriaceae   Ignavibacteriaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;