contig_metadata
9 rows where bioproject = "PRJNA489308" and tax_phylum = "Gemmatimonadota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 4277274 | 4277274 | PRJNA489308_P_NODE_32524_length_249_cov_0.875000_g32448_i0 | PRJNA489308 | 32524 | 249 | 0.875 | 2.17875 | Gemmatimonadaceae bacterium | 2026741 | Bacteria | Bacteria | 138 | 3.37e-36 | NR | MEO6445385.1 | 2026741 | g32448 | i0 | 93.2 | 0.879518072289157 | 73 | 5 | 88 | 0 | 249 | 31 | 349 | 421 | MEO6445385.1 DNA polymerase I [Gemmatimonadaceae bacterium] | diamond | 219 | 138 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatimonadaceae bacterium | ||
| 18301766 | 18301766 | PRJNA489308_P_NODE_21215_length_282_cov_1.473684_g21139_i0 | PRJNA489308 | 21215 | 282 | 1.473684 | 4.15578888 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 154 | 6.73e-42 | NR | HAC06214.1 | 2026742 | g21139 | i0 | 76.6 | 16.6702127659574 | 94 | 22 | 100 | 0 | 1 | 282 | 436 | 529 | HAC06214.1 1-pyrroline-5-carboxylate dehydrogenase [Gemmatimonadota bacterium] | diamond | 4701 | 154 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadota bacterium | |||||
| 27155194 | 27155194 | PRJNA489308_P_NODE_3502_length_538_cov_1.782796_g3426_i0 | PRJNA489308 | 3502 | 538 | 1.782796 | 9.59144248 | FCB group | 1783270 | Bacteria | Bacteria | 73.9 | 2.49e-13 | NR | KPK65332.1 | 1703358 | g3426 | i0 | 43.5 | 1.96282527881041 | 92 | 47 | 48.5 | 1 | 5 | 265 | 32 | 123 | KPK65332.1 MAG: 30S ribosomal protein S13 [Gemmatimonas sp. SG8_38_2] | diamond | 1056 | 73.9 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatimonas | Gemmatimonas sp. SG8_38_2 | |
| 28229141 | 28229141 | PRJNA489308_P_NODE_38006_length_242_cov_0.911243_g37930_i0 | PRJNA489308 | 38006 | 242 | 0.911243 | 2.20520806 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 103 | 1.3899999999999998e-23 | NR | OLC08792.1 | 1805197 | g37930 | i0 | 62.5 | 3.95454545454545 | 80 | 30 | 99.2 | 0 | 241 | 2 | 214 | 293 | OLC08792.1 MAG: long-chain fatty acid--CoA ligase [Gemmatimonadetes bacterium 13_1_40CM_70_11] | diamond | 957 | 104 | 0.990384615384615 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadetes bacterium 13_1_40CM_70_11 | |||||
| 28276380 | 28276380 | PRJNA489308_P_NODE_38406_length_241_cov_2.005952_g38330_i0 | PRJNA489308 | 38406 | 241 | 2.005952 | 4.83434432 | Gemmatimonadales bacterium | 2448054 | Bacteria | Bacteria | 57.8 | 4.64e-9 | NR | NNG15218.1 | 2448054 | g38330 | i0 | 48.2 | 0.697095435684647 | 56 | 29 | 69.7 | 0 | 173 | 6 | 3 | 58 | NNG15218.1 hypothetical protein [Gemmatimonadales bacterium] | diamond | 168 | 57.8 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadales bacterium | |||
| 29176797 | 29176797 | PRJNA489308_P_NODE_26489_length_263_cov_1.473684_g26413_i0 | PRJNA489308 | 26489 | 263 | 1.473684 | 3.87578892 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 42.7 | 0.0267 | NR | HEU5173298.1 | 2026741 | g26413 | i0 | 57.1 | 2.79467680608365 | 35 | 15 | 39.9 | 0 | 151 | 47 | 23 | 57 | HEU5173298.1 OsmC family protein [Gemmatimonadaceae bacterium] | diamond | 735 | 42.7 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatimonadaceae bacterium | ||
| 29981602 | 29981602 | PRJNA489308_P_NODE_4651_length_482_cov_1.557457_g4575_i0 | PRJNA489308 | 4651 | 482 | 1.557457 | 7.50694274 | Gemmatimonadales bacterium | 2448054 | Bacteria | Bacteria | 198 | 7.01e-62 | NR | MFI5246079.1 | 2448054 | g4575 | i0 | 60 | 7.82365145228216 | 155 | 62 | 96.5 | 0 | 10 | 474 | 12 | 166 | MFI5246079.1 SDR family NAD(P)-dependent oxidoreductase [Gemmatimonadales bacterium] | diamond | 3771 | 198 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadales bacterium | |||
| 30771637 | 30771637 | PRJNA489308_P_NODE_3694_length_527_cov_3.533040_g3618_i0 | PRJNA489308 | 3694 | 527 | 3.53304 | 18.6191208 | Longimicrobium sp. | 2029185 | Bacteria | Bacteria | 77 | 1.16e-13 | NR | HEX2080112.1 | 2029185 | g3618 | i0 | 37.4 | 1.82163187855787 | 123 | 68 | 66 | 3 | 76 | 423 | 88 | 208 | HEX2080112.1 hypothetical protein [Longimicrobium sp.] | diamond | 960 | 77 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Longimicrobiia | Longimicrobiales | Longimicrobiaceae | Longimicrobium | Longimicrobium sp. | |
| 31324641 | 31324641 | PRJNA489308_P_NODE_17595_length_298_cov_1.466667_g17519_i0 | PRJNA489308 | 17595 | 298 | 1.466667 | 4.37066766 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 107 | 7.02e-25 | NR | UCD24276.1 | 2026742 | g17519 | i0 | 58.1 | 4.68120805369128 | 93 | 38 | 93.6 | 1 | 297 | 19 | 321 | 412 | UCD24276.1 MAG: M20/M25/M40 family metallo-hydrolase [Gemmatimonadota bacterium] | diamond | 1395 | 107 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadota bacterium |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;