RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA489308" and tax_phylum = "Fidelibacterota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Fidelibacterota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA489308 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27708612 27708612 PRJNA489308_P_NODE_31704_length_250_cov_0.870056_g31628_i0 PRJNA489308 31704 250 0.870056 2.17514 Fidelibacterota bacterium 2026760 Bacteria Bacteria 92.4 1.29e-19   NR MEC9307261.1 2026760 g31628 i0 52.4 1.968 82 38 98.4 1 249 4 321 401 MEC9307261.1 family 1 glycosylhydrolase [Fidelibacterota bacterium] diamond 492 92.4 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
31245402 31245402 PRJNA489308_P_NODE_36355_length_244_cov_0.900585_g36279_i0 PRJNA489308 36355 244 0.900585 2.1974274 Fidelibacterota bacterium 2026760 Bacteria Bacteria 87 2e-19   NR HDP68710.1 2026760 g36279 i0 49.4 7.61065573770492 77 37 94.7 1 239 9 33 107 HDP68710.1 SOS response-associated peptidase [Fidelibacterota bacterium] diamond 1857 87 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
31293034 31293034 PRJNA489308_P_NODE_14995_length_313_cov_2.704167_g14919_i0 PRJNA489308 14995 313 2.704167 8.46404271 Pseudomonadati 3379134 Bacteria Bacteria 157 1.0499999999999996e-43   NR MAV64765.1 2026760 g14919 i0 70.1 4.64856230031949 97 29 93 0 291 1 351 447 MAV64765.1 beta-glucosidase [Fidelibacterota bacterium] diamond 1455 157 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;