RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA489308" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA489308 · 8 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14478948 14478948 PRJNA489308_P_NODE_8832_length_372_cov_2.311037_g8756_i0 PRJNA489308 8832 372 2.311037 8.59705764 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 151 4.32e-42   NR MDP1880507.1 2052176 g8756 i0 62.9 5 124 40 100 2 372 1 95 212 MDP1880507.1 transaldolase [Parachlamydiaceae bacterium] diamond 1860 151 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
27107777 27107777 PRJNA489308_P_NODE_37122_length_243_cov_0.905882_g37046_i0 PRJNA489308 37122 243 0.905882 2.20129326 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 99.4 1.95e-24   NR HEV8051452.1 2052176 g37046 i0 59.2 2.87654320987654 76 31 93.8 0 230 3 15 90 HEV8051452.1 alpha/beta fold hydrolase [Parachlamydiaceae bacterium] diamond 699 99.4 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
27329352 27329352 PRJNA489308_P_NODE_23843_length_272_cov_1.447236_g23767_i0 PRJNA489308 23843 272 1.447236 3.93648192 Chlamydiota bacterium 2081524 Bacteria Bacteria 89.4 2.01e-20   NR MCX6990841.1 2081524 g23767 i0 51.6 2.00735294117647 91 42 99.3 2 271 2 2 91 MCX6990841.1 NUDIX domain-containing protein [Chlamydiota bacterium] diamond 546 89.4 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
29318381 29318381 PRJNA489308_P_NODE_39069_length_241_cov_0.916667_g38993_i0 PRJNA489308 39069 241 0.916667 2.20916747 Simkaniaceae bacterium 2698248 Bacteria Bacteria 68.6 2.92e-11   NR QVL54756.1 2698248 g38993 i0 50.8 1.51867219917012 61 28 73.4 2 65 241 447 507 QVL54756.1 MAG: hypothetical protein KFB95_05390 [Simkaniaceae bacterium] diamond 366 68.6 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae   Simkaniaceae bacterium
30708214 30708214 PRJNA489308_P_NODE_37934_length_242_cov_0.911243_g37858_i0 PRJNA489308 37934 242 0.911243 2.20520806 Neochlamydia sp. TUME1 1478174 Bacteria Bacteria 50.1 6.74e-6   NR WP_080502455.1 1478174 g37858 i0 55.3 1.16528925619835 47 21 58.3 0 241 101 12 58 WP_080502455.1 DUF4116 domain-containing protein [Neochlamydia sp. TUME1] diamond 282 50.1 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Neochlamydia Neochlamydia sp. TUME1
31862241 31862241 PRJNA489308_P_NODE_20777_length_284_cov_1.317536_g20701_i0 PRJNA489308 20777 284 1.317536 3.74180224 Bacteria 2 Bacteria Bacteria 115 1.29e-28   NR WP_098039151.1 483423 g20701 i0 61.3 7.88028169014085 93 35 98.2 1 284 6 239 330 WP_098039151.1 redox-regulated ATPase YchF [Estrella lausannensis] diamond 2238 115 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Criblamydiaceae Estrella Estrella lausannensis
32052275 32052275 PRJNA489308_P_NODE_30658_length_251_cov_1.297753_g30582_i0 PRJNA489308 30658 251 1.297753 3.25736003 Estrella 483422 Bacteria Bacteria 50.8 5.39e-5   NR WP_098038465.1 483423 g30582 i0 35.4 1.67330677290837 65 40 77.7 1 248 54 65 127 WP_098038465.1 hypothetical protein [Estrella lausannensis] diamond 420 51.2 0.9921875 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Criblamydiaceae Estrella Estrella lausannensis
32668471 32668471 PRJNA489308_P_NODE_4240_length_499_cov_5.957746_g4164_i0 PRJNA489308 4240 499 5.957746 29.72915254 Chlamydiales bacterium 2047757 Bacteria Bacteria 147 1.03e-41   NR MCP5470421.1 2047757 g4164 i0 51.9 3.60120240480962 156 69 92.6 2 497 36 6 157 MCP5470421.1 hypothetical protein [Chlamydiales bacterium] diamond 1797 147 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;