RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA489308" and tax_kingdom = "Methanobacteriati"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 8 ✖

bioproject 1

  • PRJNA489308 · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6827841 6827841 PRJNA489308_P_NODE_36346_length_244_cov_0.900585_g36270_i0 PRJNA489308 36346 244 0.900585 2.1974274 Natronomonas halophila 2747817 Archaea Archaea 114 3.65e-30   NR WP_178289843.1 2747817 g36270 i0 68.4 2.96311475409836 79 25 97.1 0 239 3 58 136 WP_178289843.1 peptide-methionine (S)-S-oxide reductase MsrA [Natronomonas halophila] diamond 723 114 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Natronomonas Natronomonas halophila
17027510 17027510 PRJNA489308_P_NODE_30894_length_251_cov_0.865169_g30818_i0 PRJNA489308 30894 251 0.865169 2.17157419 Methanosarcina barkeri 2208 Archaea Archaea 52.8 0.023   NTclustered gi|805384997|gb|CP009517.1| 1434107 g30818 i0 94.118 0.270916334661355 34 2 14 0 31 64 2503792 2503759 Methanosarcina barkeri 3, complete genome blastn 68 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina barkeri
26855080 26855080 PRJNA489308_P_NODE_10961_length_345_cov_3.801471_g10885_i0 PRJNA489308 10961 345 3.801471 13.11507495 Methanocaldococcus villosus 667126 Archaea Archaea 86.7 7.67e-19   NR WP_004592618.1 667126 g10885 i0 45.8 0.930434782608696 107 40 93 2 345 25 52 140 WP_004592618.1 30S ribosomal protein S19e [Methanocaldococcus villosus] diamond 321 86.7 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus villosus
27123696 27123696 PRJNA489308_P_NODE_3922_length_515_cov_3.319005_g3846_i0 PRJNA489308 3922 515 3.319005 17.09287575 root 1 Root_unresolved Root_unresolved 84 3.27e-15   NR WP_321506807.1 1005933 g3846 i0 34.2 1.73009708737864 152 89 88.5 3 56 511 2924 3064 WP_321506807.1 DUF3821 domain-containing protein [uncultured Methanoregula sp.] diamond 891 84 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula uncultured Methanoregula sp.
27566184 27566184 PRJNA489308_P_NODE_33664_length_247_cov_1.586207_g33588_i0 PRJNA489308 33664 247 1.586207 3.91793129 Methanolobus 2220 Archaea Archaea 43.1 0.016   NR WP_209616198.1 38023 g33588 i0 48.8 0.923076923076923 41 19 47.4 1 10 126 61 101 WP_209616198.1 META domain-containing protein [Methanolobus bombayensis] diamond 228 43.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanolobus Methanolobus bombayensis
29160838 29160838 PRJNA489308_P_NODE_18909_length_292_cov_1.392694_g18833_i0 PRJNA489308 18909 292 1.392694 4.06666648 Methanoregula sp. 2052170 Archaea Archaea 70.1 1.59e-11   NR MDD1700180.1 2052170 g18833 i0 38.2 1.86986301369863 89 54 91.4 1 12 278 314 401 MDD1700180.1 PKD domain-containing protein [Methanoregula sp.] diamond 546 70.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula Methanoregula sp.
29539337 29539337 PRJNA489308_P_NODE_10330_length_352_cov_2.279570_g10254_i0 PRJNA489308 10330 352 2.27957 8.0240864 Halorussus halophilus 2650975 Archaea Archaea 58.5 3.11e-7   NR WP_158056695.1 2650975 g10254 i0 33.9 4.54261363636364 112 71 94.6 3 347 15 95 204 WP_158056695.1 DUF4397 domain-containing protein [Halorussus halophilus] diamond 1599 58.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haladaptataceae Halorussus Halorussus halophilus
30345702 30345702 PRJNA489308_P_NODE_11892_length_337_cov_1.166667_g11816_i0 PRJNA489308 11892 337 1.166667 3.93166779 root 1 Root_unresolved Root_unresolved 59.3 1.41e-7   NR HET8687089.1 2213 g11816 i0 35.2 2.99109792284866 105 61 92.6 2 312 1 187 285 HET8687089.1 hypothetical protein [Methanosarcina sp.] diamond 1008 59.3 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;