RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA489308", tax_kingdom = "Fungi" and tax_phylum = "Olpidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Olpidiomycota · 3 ✖

tax_kingdom 1

  • Fungi · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA489308 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6827649 6827649 PRJNA489308_P_NODE_1346_length_790_cov_2.461646_g1276_i0 PRJNA489308 1346 790 2.461646 19.4470034 Olpidium bornovanus 278681 Fungi Fungi 337 5.829999999999999e-109   NR BAL15351.1 278681 g1276 i0 66.1 0.918987341772152 242 82 91.9 0 63 788 52 293 BAL15351.1 translation elongation factor 2, partial [Olpidium bornovanus] diamond 726 337 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus
24676221 24676221 PRJNA489308_P_NODE_2920_length_580_cov_2.118343_g2844_i0 PRJNA489308 2920 580 2.118343 12.2863894 Olpidium bornovanus 278681 Fungi Fungi 234 1.4500000000000002e-70   NR BAL15351.1 278681 g2844 i0 57.3 4.96551724137931 192 82 99.3 0 3 578 129 320 BAL15351.1 translation elongation factor 2, partial [Olpidium bornovanus] diamond 2880 234 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus
29696937 29696937 PRJNA489308_P_NODE_12490_length_331_cov_3.220930_g12414_i0 PRJNA489308 12490 331 3.22093 10.6612783 Olpidium bornovanus 278681 Fungi Fungi 45.1 0.0149   NR KAG5458604.1 278681 g12414 i0 31.7 0.743202416918429 82 55 74.3 1 249 4 124 204 KAG5458604.1 MAG: hypothetical protein BJ554DRAFT_1143 [Olpidium bornovanus] diamond 246 45.1 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;