RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

29 rows where bioproject = "PRJNA489308", tax_clade = "Sar" and tax_phylum = "Foraminifera"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 29 ✖

tax_clade 1

  • Sar · 29 ✖

bioproject 1

  • PRJNA489308 · 29 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
450184 450184 PRJNA489308_P_NODE_15001_length_313_cov_2.408333_g14925_i0 PRJNA489308 15001 313 2.408333 7.53808229 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 137 1.19e-38   NR ETO11964.1 46433 g14925 i0 85.7 5.89456869009585 77 11 73.8 0 311 81 117 193 ETO11964.1 glycoprotein FP21 precursor [Reticulomyxa filosa] diamond 1845 137 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
2373568 2373568 PRJNA489308_P_NODE_11362_length_342_cov_1.144981_g11286_i0 PRJNA489308 11362 342 1.144981 3.91583502 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 162 2.42e-46   NR ETO33306.1 46433 g11286 i0 61.9 5.99122807017544 113 43 99.1 0 342 4 143 255 ETO33306.1 long-chain-fatty-acid-CoA ligase [Reticulomyxa filosa] diamond 2049 163 0.993865030674847 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
5553794 5553794 PRJNA489308_P_NODE_3205_length_557_cov_4.481405_g3129_i0 PRJNA489308 3205 557 4.481405 24.96142585 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 160 2.9e-46   NR ETO17530.1 46433 g3129 i0 84.9 3 93 14 50.1 0 555 277 99 191 ETO17530.1 hypothetical protein RFI_19788 [Reticulomyxa filosa] diamond 1671 160 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
14478826 14478826 PRJNA489308_P_NODE_3472_length_540_cov_1.535332_g3396_i0 PRJNA489308 3472 540 1.535332 8.2907928 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 181 8.51e-53   NR ETO28447.1 46433 g3396 i0 48 4.04444444444444 179 93 99.4 0 539 3 41 219 ETO28447.1 hydroxylamine reductase, partial [Reticulomyxa filosa] diamond 2184 181 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
26727741 26727741 PRJNA489308_P_NODE_12201_length_334_cov_1.666667_g12125_i0 PRJNA489308 12201 334 1.666667 5.56666778 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 79 1.76e-15   NR ETO34651.1 46433 g12125 i0 64.8 0.961077844311377 54 19 48.5 0 332 171 142 195 ETO34651.1 beta-hexosaminidase [Reticulomyxa filosa] diamond 321 79 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
26855092 26855092 PRJNA489308_P_NODE_21221_length_282_cov_1.473684_g21145_i0 PRJNA489308 21221 282 1.473684 4.15578888 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 75.5 1.81e-13   NR ETO13695.1 46433 g21145 i0 44.8 0.925531914893617 87 48 92.6 0 262 2 358 444 ETO13695.1 hypothetical protein RFI_23673 [Reticulomyxa filosa] diamond 261 75.5 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
26902734 26902734 PRJNA489308_P_NODE_881_length_937_cov_16.471065_g824_i0 PRJNA489308 881 937 16.471065 154.33387905 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 61.6 1.22e-6   NR ETO29173.1 46433 g824 i0 40.9 1.01494130202775 88 51 28.2 1 606 869 152 238 ETO29173.1 hypothetical protein RFI_07952, partial [Reticulomyxa filosa] diamond 951 61.6 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
27155191 27155191 PRJNA489308_P_NODE_28422_length_257_cov_1.673913_g28346_i0 PRJNA489308 28422 257 1.673913 4.30195641 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 140 1.89e-39   NR ETO18337.1 46433 g28346 i0 76.5 2.97665369649805 85 20 99.2 0 257 3 1 85 ETO18337.1 hypothetical protein RFI_18938 [Reticulomyxa filosa] diamond 765 140 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
27361036 27361036 PRJNA489308_P_NODE_25663_length_265_cov_2.682292_g25587_i0 PRJNA489308 25663 265 2.682292 7.1080738 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 86.7 1.73e-17   NR ETO26409.1 46433 g25587 i0 60.3 0.769811320754717 68 26 77 1 263 60 1196 1262 ETO26409.1 ubiquitin protein ligase, partial [Reticulomyxa filosa] diamond 204 86.7 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
27834367 27834367 PRJNA489308_P_NODE_15384_length_311_cov_1.294118_g15308_i0 PRJNA489308 15384 311 1.294118 4.02470698 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 69.7 1.82e-12   NR ETO27543.1 46433 g15308 i0 56.9 1.11897106109325 58 25 55.9 0 309 136 25 82 ETO27543.1 hypothetical protein RFI_09592, partial [Reticulomyxa filosa] diamond 348 69.7 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
27865910 27865910 PRJNA489308_P_NODE_9025_length_369_cov_1.851351_g8949_i0 PRJNA489308 9025 369 1.851351 6.83148519 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 60.5 6.6e-8   NR ETO15747.1 46433 g8949 i0 49 0.788617886178862 51 26 41.5 0 304 152 148 198 ETO15747.1 heterogeneous nuclear ribonucleoprotein H [Reticulomyxa filosa] diamond 291 60.5 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
28529271 28529271 PRJNA489308_P_NODE_10987_length_345_cov_2.117647_g10911_i0 PRJNA489308 10987 345 2.117647 7.30588215 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 50.8 1.45e-4   NR ETO31308.1 46433 g10911 i0 36.5 1 115 69 97.4 3 343 8 142 255 ETO31308.1 hypothetical protein RFI_05812 [Reticulomyxa filosa] diamond 345 50.8 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
28655478 28655478 PRJNA489308_P_NODE_40447_length_229_cov_3.038462_g40371_i0 PRJNA489308 40447 229 3.038462 6.95807798 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 110 3.37e-26   NR ETO26164.1 46433 g40371 i0 62.3 5.04366812227074 77 28 99.6 1 2 229 2164 2240 ETO26164.1 ubiquitin protein ligase [Reticulomyxa filosa] diamond 1155 110 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
28781494 28781494 PRJNA489308_P_NODE_28207_length_258_cov_1.291892_g28131_i0 PRJNA489308 28207 258 1.291892 3.33308136 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 59.7 4.87e-8   NR ETO14021.1 46433 g28131 i0 35.1 0.86046511627907 74 48 86 0 257 36 2164 2237 ETO14021.1 Ubiquitin carboxyl-terminal hydrolase family protein [Reticulomyxa filosa] diamond 222 59.7 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
28812931 28812931 PRJNA489308_P_NODE_23388_length_273_cov_2.730000_g23312_i0 PRJNA489308 23388 273 2.73 7.4529 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 43.5 0.0292   NR ETO09985.1 46433 g23312 i0 33.9 1.23076923076923 56 35 61.5 1 192 25 61 114 ETO09985.1 hypothetical protein RFI_27393 [Reticulomyxa filosa] diamond 336 43.5 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
29350086 29350086 PRJNA489308_P_NODE_2069_length_666_cov_6.042159_g1994_i0 PRJNA489308 2069 666 6.042159 40.24077894 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 65.5 4.38e-9   NR ETO05799.1 46433 g1994 i0 37.5 0.396396396396396 88 53 39.6 2 584 321 49 134 ETO05799.1 hypothetical protein RFI_31598 [Reticulomyxa filosa] diamond 264 65.5 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
29507801 29507801 PRJNA489308_P_NODE_29670_length_253_cov_2.655556_g29594_i0 PRJNA489308 29670 253 2.655556 6.71855668 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 53.1 2.51e-6   NR ETO29865.1 46433 g29594 i0 57.1 0.49802371541502 42 18 49.8 0 21 146 20 61 ETO29865.1 GTP-binding nuclear protein RAN1 [Reticulomyxa filosa] diamond 126 53.1 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
29649780 29649780 PRJNA489308_P_NODE_34050_length_247_cov_0.885057_g33974_i0 PRJNA489308 34050 247 0.885057 2.18609079 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 71.6 2.62e-12   NR ETO33242.1 46433 g33974 i0 42 5.50202429149798 81 44 98.4 1 4 246 580 657 ETO33242.1 hypothetical protein RFI_03863 [Reticulomyxa filosa] diamond 1359 71.6 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
29760341 29760341 PRJNA489308_P_NODE_5471_length_451_cov_2.087302_g5395_i0 PRJNA489308 5471 451 2.087302 9.41373202 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 57.8 1.49e-6   NR ETO10760.1 46433 g5395 i0 56.5 0.87139689578714 46 20 30.6 0 3 140 230 275 ETO10760.1 hypothetical protein RFI_26615 [Reticulomyxa filosa] diamond 393 57.8 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
29760344 29760344 PRJNA489308_P_NODE_7791_length_391_cov_1.937107_g7715_i0 PRJNA489308 7791 391 1.937107 7.57408837 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 69.3 1.07e-10   NR ETO14685.1 46433 g7715 i0 30.9 1.06649616368286 139 81 95.1 1 372 1 3365 3503 ETO14685.1 hypothetical protein RFI_22684, partial [Reticulomyxa filosa] diamond 417 69.3 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
31024271 31024271 PRJNA489308_P_NODE_23295_length_274_cov_1.383085_g23219_i0 PRJNA489308 23295 274 1.383085 3.7896529 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 46.2 0.00198   NR ETO26716.1 46433 g23219 i0 33 1.06204379562044 97 57 97.4 3 273 7 85 181 ETO26716.1 hypothetical protein RFI_10417 [Reticulomyxa filosa] diamond 291 46.2 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
31467006 31467006 PRJNA489308_P_NODE_24776_length_269_cov_1.178571_g24700_i0 PRJNA489308 24776 269 1.178571 3.17035599 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 112 1.6e-28   NR ETO15830.1 46433 g24700 i0 62.4 0.947955390334573 85 31 94.8 1 6 260 131 214 ETO15830.1 ubiquitin domain-containing protein [Reticulomyxa filosa] diamond 255 112 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
31751404 31751404 PRJNA489308_P_NODE_40737_length_227_cov_2.532468_g40661_i0 PRJNA489308 40737 227 2.532468 5.74870236 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 77.8 7.91e-16   NR ETO33553.1 46433 g40661 i0 56.7 0.885462555066079 67 25 83.3 1 225 37 106 172 ETO33553.1 2-oxoglutarate dehydrogenase, E1 component [Reticulomyxa filosa] diamond 201 77.8 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
31972928 31972928 PRJNA489308_P_NODE_7558_length_395_cov_2.204969_g7482_i0 PRJNA489308 7558 395 2.204969 8.70962755 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 52 7e-5   NR ETO12621.1 46433 g7482 i0 65.8 0.288607594936709 38 13 28.9 0 3 116 193 230 ETO12621.1 aminopeptidase [Reticulomyxa filosa] diamond 114 52 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
32131333 32131333 PRJNA489308_P_NODE_27138_length_261_cov_1.542553_g27062_i0 PRJNA489308 27138 261 1.542553 4.02606333 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 51.2 5.06e-5   NR ETO00116.1 46433 g27062 i0 54.3 0.528735632183908 46 18 49.4 1 261 133 1745 1790 ETO00116.1 hypothetical protein RFI_37343, partial [Reticulomyxa filosa] diamond 138 51.2 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
32511185 32511185 PRJNA489308_P_NODE_9019_length_369_cov_2.070946_g8943_i0 PRJNA489308 9019 369 2.070946 7.64179074 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 91.3 1.78e-19   NR ETO05047.1 46433 g8943 i0 48.1 0.658536585365854 81 42 65.9 0 125 367 22 102 ETO05047.1 G-rich sequence factor 1, partial [Reticulomyxa filosa] diamond 243 91.3 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
32636819 32636819 PRJNA489308_P_NODE_9280_length_366_cov_1.051195_g9204_i0 PRJNA489308 9280 366 1.051195 3.8473737 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 94 1.49e-19   NR ETO15214.1 46433 g9204 i0 53.9 2.20491803278689 89 41 73 0 274 8 334 422 ETO15214.1 hypothetical protein RFI_22150, partial [Reticulomyxa filosa] diamond 807 94 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
32699923 32699923 PRJNA489308_P_NODE_4580_length_484_cov_24.559611_g4504_i0 PRJNA489308 4580 484 24.559611 118.86851724 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 63.5 2.04e-8   NR ETO29173.1 46433 g4504 i0 40.9 0.545454545454545 88 51 54.5 1 332 69 152 238 ETO29173.1 hypothetical protein RFI_07952, partial [Reticulomyxa filosa] diamond 264 63.5 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
32794252 32794252 PRJNA489308_P_NODE_25260_length_267_cov_1.556701_g25184_i0 PRJNA489308 25260 267 1.556701 4.15639167 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 58.9 9.35e-8   NR ETO27359.1 46433 g25184 i0 39.5 0.910112359550562 81 46 91 1 247 5 304 381 ETO27359.1 hypothetical protein RFI_09772, partial [Reticulomyxa filosa] diamond 243 58.9 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;