RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA489308", tax_clade = "FCB group" and tax_phylum = "Chlorobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA489308 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28560812 28560812 PRJNA489308_P_NODE_5987_length_435_cov_1.301105_g5911_i0 PRJNA489308 5987 435 1.301105 5.65980675 Chlorobiota bacterium 2268192 Bacteria Bacteria 155 3.59e-44   NR MCX7929629.1 2268192 g5911 i0 59 15.2068965517241 122 50 84.1 0 69 434 117 238 MCX7929629.1 FKBP-type peptidyl-prolyl cis-trans isomerase [Chlorobiota bacterium] diamond 6615 155 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium
29302865 29302865 PRJNA489308_P_NODE_10049_length_356_cov_1.070671_g9973_i0 PRJNA489308 10049 356 1.070671 3.81158876 Pseudomonadati 3379134 Bacteria Bacteria 160 2.41e-44   NR NTW50790.1 2723030 g9973 i0 61.5 3.90168539325843 117 45 98.6 0 3 353 354 470 NTW50790.1 aldehyde dehydrogenase [Chlorobiales bacterium] diamond 1389 160 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales     Chlorobiales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;