RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA489308", tax_clade = "FCB group" and tax_phylum = "Candidatus Hydrogenedentota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Hydrogenedentota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA489308 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30644891 30644891 PRJNA489308_P_NODE_25493_length_266_cov_1.595855_g25417_i0 PRJNA489308 25493 266 1.595855 4.2449743 Candidatus Hydrogenedens sp. 2654184 Bacteria Bacteria 48.5 4.57e-4   NR MBI1320468.1 2654184 g25417 i0 44.8 0.755639097744361 67 32 75.6 1 39 239 14 75 MBI1320468.1 hypothetical protein [Candidatus Hydrogenedens sp.] diamond 201 48.5 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota Candidatus Hydrogenedentia Candidatus Hydrogenedentales Candidatus Hydrogenedentaceae Candidatus Hydrogenedens Candidatus Hydrogenedens sp.
31877881 31877881 PRJNA489308_P_NODE_34337_length_246_cov_1.780347_g34261_i0 PRJNA489308 34337 246 1.780347 4.37965362 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 45.1 0.00272   NR MEA3365039.1 2030809 g34261 i0 35 0.731707317073171 60 39 73.2 0 180 1 20 79 MEA3365039.1 cyclic nucleotide-binding domain-containing protein [Candidatus Hydrogenedentota bacterium] diamond 180 45.1 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
32337284 32337284 PRJNA489308_P_NODE_2859_length_585_cov_2.947266_g2783_i0 PRJNA489308 2859 585 2.947266 17.2415061 Bacteria 2 Bacteria Bacteria 151 1.2799999999999996e-40   NR OQC07833.1 1852847 g2783 i0 54.9 2.21538461538462 142 63 72.8 1 431 6 8 148 OQC07833.1 MAG: 2-aminoethylphosphonate--pyruvate transaminase [Candidatus Hydrogenedentes bacterium ADurb.Bin101] diamond 1296 151 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentes bacterium ADurb.Bin101

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;