RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA489308", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Minisyncoccota"

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tax_superkingdom 1

tax_phylum 1

  • Minisyncoccota · 2 ✖

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA489308 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28055354 28055354 PRJNA489308_P_NODE_33105_length_248_cov_0.880000_g33029_i0 PRJNA489308 33105 248 0.88 2.1824 Minisyncoccota bacterium 2053589 Bacteria Bacteria 79.3 4.98e-15   NR MDR3546658.1 2053589 g33029 i0 43.9 1.875 82 46 99.2 0 246 1 155 236 MDR3546658.1 transposase [Candidatus Paceibacterota bacterium] diamond 465 79.3 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
32004608 32004608 PRJNA489308_P_NODE_13498_length_324_cov_1.227092_g13422_i0 PRJNA489308 13498 324 1.227092 3.97577808 Candidatus Pacebacteria bacterium CG_4_1 1974759 Bacteria Bacteria 100 2.19e-24   NR PIY80637.1 1974759 g13422 i0 65.2 1.31481481481481 69 24 63.9 0 2 208 82 150 PIY80637.1 MAG: hypothetical protein COY80_01810, partial [Candidatus Pacebacteria bacterium CG_4_10_14_0_8_um_filter_42_14] diamond 426 100 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Candidatus Pacebacteria bacterium CG_4_10_14_0_8_um_filter_42_14

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;