RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA489308", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 2 ✖

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA489308 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8103287 8103287 PRJNA489308_P_NODE_21787_length_280_cov_0.961353_g21711_i0 PRJNA489308 21787 280 0.961353 2.6917884 Nolandella sp. LAK-2 1908693 Tubulinea other_Eukaryota 137 8.88e-38   NR AFX73095.1 1260117 g21711 i0 88.3 2.475 77 9 82.5 0 48 278 3 79 AFX73095.1 elongation factor 2 alpha, partial [Nolandella sp. LAK-2012] diamond 693 137 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Nolandella Nolandella sp. LAK-2012
32605585 32605585 PRJNA489308_P_NODE_9540_length_362_cov_2.387543_g9464_i0 PRJNA489308 9540 362 2.387543 8.64290566 Amoeba proteus 5775 Tubulinea other_Eukaryota 53.5 1.84e-5   NR AKN09692.1 5775 g9464 i0 33.7 0.861878453038674 104 64 82 3 314 18 99 202 AKN09692.1 Tom40 [Amoeba proteus] diamond 312 53.5 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;